New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2095993 =176 (0.870)3 (0.010) 3/178 32.9 0.02 coding (794/981 nt) gne UDP‑GlcNAc 4‑epimerase
?NC_014034 3703985 = 189 (0.840)coding (127/2640 nt) mutS DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

CCGCCTCGGCCCAAAGCGGCAGGATGTTGGTGGAGATCATCAGCTTCTCGATCCGCTCGGGATGGATGCCGAGGCCGGTGGCCGAGATCGGCCGCAGGGCCGCCGCCGCCG....................................................................................................  <  NC_014034/2096103‑2095993
....................................................................................................CGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGAAATCGCCCATCCGGTAGAACAGCAGCGCCCCCGGGTTCGCCTGCTTGATCGCCAGATATTGCGCCAT  >  NC_014034/3703985‑3704084
                                                                                                                                                                                                                   
           CAAAGCGGCAGGATGTTGGTGGAGATCATCAGCTTCTCGATCCGCTCGGGATGGATGCCGAGGCCGGTGGCCGAGATCGGCCGCAGGGCCGCCGCCGCCGC                                                                                                     >  2:1116105/1‑101 (MQ=255)
                                                        TCGGGATGGATGCCGAGGCCGGTGGCCGAGATCGGCCGCAGGGCCGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGAAAACGCCCATCCG                                                        >  2:4211238/1‑101 (MQ=255)
                                                                   GCCGAGGCCGGTGGCCGAGATCGGCCGCAGGGCCGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGAAACCGCCCATCCGGTAGAACAGCA                                             <  1:4211499/101‑1 (MQ=255)
                                                                                                                                                                                                                   
CCGCCTCGGCCCAAAGCGGCAGGATGTTGGTGGAGATCATCAGCTTCTCGATCCGCTCGGGATGGATGCCGAGGCCGGTGGCCGAGATCGGCCGCAGGGCCGCCGCCGCCG....................................................................................................  <  NC_014034/2096103‑2095993
....................................................................................................CGCCGCCGCCGCCGCCACGGCATCGTCAAAGAACATCTCGTAGAAATCGCCCATCCGGTAGAACAGCAGCGCCCCCGGGTTCGCCTGCTTGATCGCCAGATATTGCGCCAT  >  NC_014034/3703985‑3704084

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG