New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2185845	46 (0.210)	39 (0.180)	22/194	20.8	0.47	intergenic (+118/‑387)	mtlK/RCAP_rcc02028	mannitol 2‑dehydrogenase/FeoA family protein
	?	NC_014034	2330182 =	43 (0.190)					intergenic (+157/+155)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCCCCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC..................................................................................................  >  NC_014034/2185743‑2185845 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAT  >  NC_014034/2330182‑2330279                                                                                                                                                                                                               CCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCC                                                                                                   <  1:2436781/101‑1 (MQ=11)     CGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGGGGCGCCCCCc                                                                                                  >  2:4145332/1‑100 (MQ=2)     CGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCG                                                                                                  <  2:3877003/101‑1 (MQ=31)          CAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCC                                                                                             <  2:3377848/101‑1 (MQ=35)            GGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCC                                                                                           <  1:2555353/101‑1 (MQ=35)             GCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCG                                                                                          <  1:557377/101‑1 (MQ=35)             GCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCG                                                                                          <  1:4257584/101‑1 (MQ=35)             GCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCG                                                                                          <  1:3285711/101‑1 (MQ=35)                GCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCG                                                                                       <  2:805735/101‑1 (MQ=38)                     GCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGGATTT                                                                                  >  2:2888930/1‑101 (MQ=255)                      tTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTa                                                                                 <  1:2073907/100‑2 (MQ=255)                      CTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTa                                                                                 <  2:225053/101‑2 (MQ=255)                      CTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTa                                                                                 <  1:1990407/101‑2 (MQ=255)                       TCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTat                                                                                <  2:2022875/101‑3 (MQ=255)                        CCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGGGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatc                                                                               <  1:1286189/101‑4 (MQ=255)                         CCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcc                                                                              >  1:1734431/1‑97 (MQ=255)                         CCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcc                                                                              <  1:3065749/101‑5 (MQ=255)                             CCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTatcccaag                                                                          <  1:1781537/101‑9 (MQ=255)                              CGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGA                                                                         <  2:697691/101‑1 (MQ=255)                                  CGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAA                                                                     <  1:3124769/101‑1 (MQ=255)                                    GGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTATCCCAAGAAAAAGC                                                                   <  1:2016186/101‑1 (MQ=255)                                                                             gcGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGG                           >  2:712034/3‑101 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                         <  2:4393994/101‑1 (MQ=32)                                                                               GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGC                         <  2:3926941/101‑1 (MQ=32)                                                                                   acccggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCT                     <  1:1786334/95‑1 (MQ=32)                                                                                      cggGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCAGGGCCCCGGATCACCGGCGGACCGGGCGGCTTTC                  >  1:3828947/4‑101 (MQ=12)                                                                                         GCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACC               <  1:528245/101‑1 (MQ=1)                                                                                          CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCT              <  1:3713511/101‑1 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG             >  2:4153253/1‑101 (MQ=1)                                                                                           GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTG             <  2:3182078/101‑1 (MQ=1)                                                                                             GGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGG           <  2:3067909/101‑1 (MQ=1)                                                                                               GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGC         >  1:3462125/1‑101 (MQ=1)                                                                                                CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCC        <  1:3304813/101‑1 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA       <  2:3411448/101‑1 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA       >  1:1478313/1‑101 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA       >  1:2244058/1‑101 (MQ=1)                                                                                                 TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCA       >  1:2376141/1‑101 (MQ=1)                                                                                                  CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAA      >  2:1217827/1‑101 (MQ=1)                                                                                                    GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAG    >  2:1435079/1‑101 (MQ=1)                                                                                                                                                                                                            GCCCCGGAACAGGCGGCCCCGCTCCCTCCCGGGCGGGGCCGCCTGATGTGCAAAGCGGTTTCGCCTCGGCGGTGCCGAGGCGACCC.TGCGGGGGCTCCGCCCC..................................................................................................  >  NC_014034/2185743‑2185845 .....................................................................................................CCCCGCACCCCCGGCGTATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAT  >  NC_014034/2330182‑2330279 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG