New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =256 (1.160)11 (0.050) 6/196 31.6 0.04 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222123 288 (1.270)coding (534/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222053‑221953
...................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG  <  NC_014034/222123‑222024
                                                                                                                                                                                                         
       cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                               <  1:2781782/99‑1 (MQ=0)
       cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                               >  2:3862901/3‑101 (MQ=0)
        gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                              >  1:1284586/2‑101 (MQ=0)
           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           >  1:1684638/1‑101 (MQ=0)
           GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                           >  2:3983283/1‑101 (MQ=0)
              cCCGACCGATCCCCCGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                                                        <  1:1529639/100‑1 (MQ=0)
                 GACTGATACCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                     <  2:602321/101‑1 (MQ=0)
                 GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACgggcccca                                                                                     >  2:3949558/1‑93 (MQ=0)
                  gCCGATCCCACGGACCCGTCCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                    <  2:584823/100‑1 (MQ=0)
                  cCCGACCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                    <  2:4250071/100‑1 (MQ=0)
                     GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGCTCCCACGGc                                                                                 >  2:3737044/1‑100 (MQ=0)
                                                     GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCCACGGACCCca                                                 >  1:2461708/1‑99 (MQ=0)
                                                                                                                                                                                                         
ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC....................................................................................................  <  NC_014034/222053‑221953
...................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACG  <  NC_014034/222123‑222024

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 21 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG