New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =233 (1.180)27 (0.140) 24/174 17.8 0.11 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222128 204 (0.900)coding (529/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC................................................................  <  NC_014034/222046‑221953
...........................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACG  <  NC_014034/222128‑222078
                                                                                              |||||||||||||                                                   
cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                           >  2:3862901/3‑101 (MQ=0)
cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                           <  1:2781782/99‑1 (MQ=0)
 gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                          >  1:1284586/2‑101 (MQ=0)
    GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                       >  1:1684638/1‑101 (MQ=0)
    GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                       >  2:3983283/1‑101 (MQ=0)
       cCCGACCGATCCCCCGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                    <  1:1529639/100‑1 (MQ=0)
          GACTGATACCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                 <  2:602321/101‑1 (MQ=0)
          GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACgggcccca                                                 >  2:3949558/1‑93 (MQ=0)
           gCCGATCCCACGGACCCGTCCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                <  2:584823/100‑1 (MQ=0)
           cCCGACCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                <  2:4250071/100‑1 (MQ=0)
              GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGCTCCCACGGc                                             >  2:3737044/1‑100 (MQ=0)
                 CCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                          <  1:2809759/101‑1 (MQ=0)
                  CCACGGCCCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                         <  1:4100213/101‑1 (MQ=0)
                   CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCACACGGACCCGACCGATCCGACGGACCCGACCGATCCCACAGACCCGA                                        >  1:3994096/1‑101 (MQ=0)
                    ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCGACGGACCCGAC                                       >  2:3977186/1‑101 (MQ=0)
                      GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACgg                                     >  1:1404754/1‑99 (MQ=9)
                       GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGGTCACACGGACCCGACCGA                                    >  2:3977066/1‑101 (MQ=255)
                            GACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCA                               >  1:4114343/1‑101 (MQ=255)
                               CGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCCCGc                            >  2:2635600/1‑100 (MQ=255)
                                GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCCACCCATCCCACGGA                           >  1:794533/1‑101 (MQ=255)
                                    CCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCG                       <  1:185306/101‑1 (MQ=0)
                                      ACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGAC                     <  1:4270626/101‑1 (MQ=255)
                                       CGGACCCGACCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACC                    <  1:2140132/101‑1 (MQ=255)
                                             CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCCACCGATCCg              >  2:3756231/1‑100 (MQ=0)
                                              GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACAGATCCCA             >  1:3978278/1‑101 (MQ=0)
                                                CCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGACCCCACGGATCCCACCGATCCGACG           >  1:1999200/1‑101 (MQ=255)
                                                  GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCAACGGATCCCACCGATCCGACGGA         >  2:3650785/1‑101 (MQ=255)
                                                    TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGATCCCACCGATCCGACGGACC       >  1:1338011/1‑101 (MQ=255)
                                                     CCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGACCCGACGGACCC      >  2:970900/1‑101 (MQ=255)
                                                      CCACGGCCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCG     <  2:2894824/101‑1 (MQ=255)
                                                       CACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGTACCCGA    >  2:3345195/1‑101 (MQ=255)
                                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAGCCCACGGATCCCACCGATCCGACGGACCCGAC   >  2:1355343/1‑101 (MQ=255)
                                                         CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGccc  <  1:2558968/101‑4 (MQ=255)
                                                                                              |||||||||||||                                                   
CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC................................................................  <  NC_014034/222046‑221953
...........................................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACG  <  NC_014034/222128‑222078

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG