New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221956 =277 (1.240)14 (0.060) 8/192 29.4 0.03 coding (701/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 771 (3.410)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC...................................................................................................  <  NC_014034/222055‑221956
.....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC  <  NC_014034/222062‑221965
                                                                                                    |                                                                                                  
CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCG                                                                                                    <  1:1646921/101‑1 (MQ=1)
CGACCGATCCCACGGATCCGACCGATCCCAAGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCG                                                                                                    <  1:318561/101‑1 (MQ=1)
  tgggatcggtCGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  >  2:4322508/11‑101 (MQ=0)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGCCCGATCCCCCGGACCCGACCGATCCGcc                                                                                                  >  1:3217596/1‑99 (MQ=0)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  <  1:1661257/101‑1 (MQ=1)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  <  1:2404539/101‑1 (MQ=1)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  >  1:2633904/1‑101 (MQ=1)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  <  1:3536027/101‑1 (MQ=1)
  ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC                                                                                                  <  1:4356727/101‑1 (MQ=1)
         cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                           <  1:2781782/99‑1 (MQ=0)
         cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                           >  2:3862901/3‑101 (MQ=0)
          gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                          >  1:1284586/2‑101 (MQ=0)
             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                       >  1:1684638/1‑101 (MQ=0)
             GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                       >  2:3983283/1‑101 (MQ=0)
                cCCGACCGATCCCCCGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                                                    <  1:1529639/100‑1 (MQ=0)
                   GACTGATACCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                 <  2:602321/101‑1 (MQ=0)
                   GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACgggcccca                                                                                 >  2:3949558/1‑93 (MQ=0)
                    gCCGATCCCACGGACCCGTCCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                <  2:584823/100‑1 (MQ=0)
                    cCCGACCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                <  2:4250071/100‑1 (MQ=0)
                       GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGCTCCCACGGc                                                                             >  2:3737044/1‑100 (MQ=0)
                                                      CGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGAGCCGACCGATCCCACGGAGCCCACCGATCCg                                              >  2:3756231/1‑100 (MQ=0)
                                                       GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACAGATCCCA                                             >  1:3978278/1‑101 (MQ=0)
                                                                                                  CCGACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC  <  2:3440596/101‑1 (MQ=12)
                                                                                                    |                                                                                                  
CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCC...................................................................................................  <  NC_014034/222055‑221956
.....................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCC  <  NC_014034/222062‑221965

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG