New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221962 =467 (2.130)56 (0.260) 19/194 22.4 0.14 coding (695/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222129 229 (1.010)coding (528/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC.................................................  <  NC_014034/222060‑221962
......................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC  <  NC_014034/222129‑222084
                                                                                                   |||                                              
GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGG                                                 >  1:3756938/1‑101 (MQ=11)
GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGG                                                 >  1:2420042/1‑101 (MQ=11)
   CCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCAACGGACCCGACGGACC                                              >  2:3153259/1‑101 (MQ=1)
    CCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGCTCCCACGGATCCGACGGACCC                                             <  1:2544590/101‑1 (MQ=12)
     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCGGACCCC                                            >  2:460092/1‑101 (MQ=9)
     CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGCCCCC                                            >  2:1020339/1‑101 (MQ=9)
     CGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCC                                            <  1:847355/101‑1 (MQ=9)
      GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                           >  2:281797/1‑101 (MQ=11)
       ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                          <  2:4439004/101‑1 (MQ=0)
       ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                          <  1:2375603/101‑1 (MQ=2)
        cggacCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACGGACCCCACG                                         >  1:3264308/6‑101 (MQ=0)
         CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                        <  1:1229812/101‑1 (MQ=2)
         CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                        <  1:731629/101‑1 (MQ=0)
          GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCCCGGA                                       >  1:3412900/1‑101 (MQ=0)
          GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCCCGGA                                       >  1:2723651/1‑101 (MQ=0)
          GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                       >  1:961665/1‑101 (MQ=0)
           ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                      <  2:511524/101‑1 (MQ=0)
            TCCCACGGATCCGACCGATCCCACGGACCCGACTGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                     <  1:3788898/101‑1 (MQ=0)
            TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                     >  1:424874/1‑101 (MQ=0)
                cCGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                 <  2:3968454/100‑1 (MQ=0)
                ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGcc                                 >  1:3078167/1‑99 (MQ=0)
                ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                 <  1:3260600/101‑1 (MQ=0)
                ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                 <  2:3814833/101‑1 (MQ=0)
                ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                 <  2:2926901/101‑1 (MQ=0)
                  GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCacccg                               >  1:382586/1‑96 (MQ=0)
                  GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAACCGACCG                               >  2:2275065/1‑101 (MQ=0)
                    acCCGACCGACCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAT                             <  1:2312420/99‑1 (MQ=9)
                    ATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAc                             >  1:4079928/1‑100 (MQ=0)
                     TCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGAcc                            >  1:1071050/1‑99 (MQ=0)
                      nCGNCNGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCn                           <  1:1068651/100‑2 (MQ=2)
                      CCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGCCGGACCCCACGGACCCGACCGATCC                           >  1:3940394/1‑101 (MQ=0)
                       CGACCGATCCCACGTACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCC                          <  2:487622/101‑1 (MQ=0)
                       CGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGCTCCC                          >  1:50344/1‑101 (MQ=0)
                        nACCGNTCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCA                         <  1:1036680/100‑1 (MQ=0)
                         ACCGATCCCACGGTCCCGACCGATCCCCCGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCCACGGACCCGACCGATCCCAC                        <  1:816708/101‑1 (MQ=0)
                          CCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCCACCGATCCCACG                       >  1:1083305/1‑101 (MQ=0)
                            GATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGCACCCGACCGATCCCACGGA                     >  1:785139/1‑101 (MQ=0)
                              TCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                   <  2:3011420/101‑3 (MQ=9)
                              TCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                   <  2:3397751/101‑3 (MQ=2)
                              TCCCACGGACCCTACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                   <  2:3396424/101‑3 (MQ=2)
                              TCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGAcc                   <  2:4384852/101‑3 (MQ=17)
                                CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGcgcccg                 >  1:1833669/1‑95 (MQ=0)
                                  cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC               <  2:1226149/100‑1 (MQ=14)
                                  ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC               >  1:3602247/1‑101 (MQ=17)
                                  ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC               <  1:2890362/101‑1 (MQ=17)
                                   tGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  1:1879254/100‑1 (MQ=2)
                                   CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  2:3973232/101‑1 (MQ=11)
                                   CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  2:3090590/101‑1 (MQ=14)
                                   CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  2:2436429/101‑1 (MQ=11)
                                   CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  1:1573937/101‑1 (MQ=11)
                                   CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACC              <  1:1020424/101‑1 (MQ=11)
                                    GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG             >  2:317798/1‑101 (MQ=11)
                                    GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG             >  2:4416878/1‑101 (MQ=11)
                                    GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG             <  1:1369696/101‑1 (MQ=11)
                                    GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCG             >  2:535732/1‑101 (MQ=11)
                                     GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA            >  2:2352280/1‑101 (MQ=0)
                                      ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAc           >  2:1904695/1‑100 (MQ=2)
                                               ATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAGCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGAC  <  1:1941616/101‑1 (MQ=9)
                                                                                                   |||                                              
GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC.................................................  <  NC_014034/222060‑221962
......................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC  <  NC_014034/222129‑222084

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG