New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221968 =575 (3.440)57 (0.340) 7/148 25.5 0.13 coding (689/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222102 184 (0.810)coding (555/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA.................................................................................................  <  NC_014034/222083‑221968
..........................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222102‑222006
                                                                                                                                                                                                                     
                ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                                                                                                  <  2:2252030/101‑1 (MQ=2)
                ATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                                                                                                  <  1:3863154/101‑1 (MQ=2)
                 cccccCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                 <  2:608054/96‑1 (MQ=9)
                 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                 <  1:46796/101‑1 (MQ=9)
                 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                 >  2:4076870/1‑101 (MQ=9)
                 TCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                                                                                                 >  1:2953150/1‑101 (MQ=9)
                  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                                                                <  2:953428/101‑1 (MQ=12)
                  CCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCC                                                                                                <  1:149328/101‑1 (MQ=12)
                   cgACGGAGCCGACCGATCCCACCGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                                                               <  1:2153752/99‑1 (MQ=12)
                   CTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                                                                                               <  1:1928175/101‑1 (MQ=9)
                    cACGGACCCCACCGATCCCCCGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGA                                                                                              <  2:3353483/100‑1 (MQ=9)
                     ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGcc                                                                                             >  2:3786214/1‑99 (MQ=0)
                     ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                                                                                             >  2:1351664/1‑101 (MQ=32)
                     ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                                                                                             >  2:2367021/1‑101 (MQ=32)
                       GGATCCGACCGATCCCAGGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                           <  1:549054/101‑1 (MQ=0)
                       GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCG                                                                                           >  1:1211445/1‑101 (MQ=0)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                                                           >  1:2420042/1‑99 (MQ=11)
                       GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACgg                                                                                           >  1:3756938/1‑99 (MQ=11)
                           CCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCC                                                                                       >  2:237529/1‑101 (MQ=2)
                           CCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC                                                                                       >  2:3563660/1‑101 (MQ=1)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                                                                     >  1:1008839/1‑101 (MQ=2)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                                                                     <  1:2192787/101‑1 (MQ=0)
                             GACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                                                                     >  1:2866214/1‑101 (MQ=2)
                             GACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACAGATCACA                                                                                     >  2:3970956/1‑101 (MQ=0)
                             GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCA                                                                                     >  2:281797/1‑101 (MQ=11)
                              ACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                                                                                    >  1:3426601/1‑101 (MQ=2)
                              ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                    <  2:4439004/101‑1 (MQ=0)
                              ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                                    <  1:2375603/101‑1 (MQ=2)
                                CGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                                                                                  <  2:3982302/101‑1 (MQ=0)
                                CGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACAGACACGACCGATCCCACGGATCCGACCGATCCCACGG                                                                                  >  1:3802567/1‑101 (MQ=0)
                                CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                  <  1:1229812/101‑1 (MQ=2)
                                CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGG                                                                                  <  1:731629/101‑1 (MQ=0)
                                 GATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCCATCCCACGGATCCGACCGATCCCACcgc                                                                                 >  1:1831017/1‑98 (MQ=0)
                                 GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGA                                                                                 >  1:961665/1‑101 (MQ=0)
                                  ATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGAC                                                                                <  2:511524/101‑1 (MQ=0)
                                   TCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACC                                                                               >  1:424874/1‑101 (MQ=0)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  1:2166604/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  1:3509499/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  1:1862379/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  1:1530777/98‑1 (MQ=12)
                                    cctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  1:3170392/98‑1 (MQ=12)
                                    ccaACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                                                                              <  2:3749152/98‑1 (MQ=12)
                                     ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAGGGACCCG                                                                             >  2:4149388/3‑101 (MQ=12)
                                     ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG                                                                             <  1:1925008/99‑1 (MQ=17)
                                     ctACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG                                                                             <  2:748358/99‑1 (MQ=17)
                                      tACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                                                                            >  1:3891922/2‑101 (MQ=17)
                                       cCGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                           <  2:3968454/100‑1 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                           >  1:1811917/1‑101 (MQ=17)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGcc                                                                           >  1:3078167/1‑99 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                           <  1:3260600/101‑1 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                           <  2:3814833/101‑1 (MQ=0)
                                       ACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGAC                                                                           <  2:2926901/101‑1 (MQ=0)
                                        CGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGgcc                                                                          <  2:1254635/101‑4 (MQ=12)
                                         GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGcccg                                                                         >  1:1003354/1‑97 (MQ=12)
                                         GGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACcg                                                                         >  2:3469628/1‑99 (MQ=14)
                                         GGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAACCGACCGATCCCACGGATCCGACCGAACCCACGGACACGACcg                                                                         >  2:3384949/1‑99 (MQ=9)
                                               GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCCACGGACCCca                                                                   >  1:2461708/1‑99 (MQ=0)
                                                                                                                                                                                                                     
CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA.................................................................................................  <  NC_014034/222083‑221968
..........................................................................................CCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG  <  NC_014034/222102‑222006

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG