New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221992 =855 (5.040)12 (0.070) 7/150 25.8 0.02 coding (665/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222101 234 (1.030)coding (556/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

TACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC.............................................................................................................................  <  NC_014034/222063‑221992
.................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002
                                                                        |||||||||||||||||||||||||                                                                                                    
cACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGA                                                                                                  >  1:2772232/2‑101 (MQ=255)
  CGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACC                                                                                                <  1:4312267/101‑1 (MQ=255)
   GGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCG                                                                                               <  1:1657904/101‑1 (MQ=255)
     ACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGAT                                                                                             <  1:1185771/101‑1 (MQ=255)
       CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                           >  1:1387319/1‑101 (MQ=255)
       CCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCC                                                                                           <  1:2028716/101‑1 (MQ=255)
        CGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCg                                                                                          >  1:1075242/1‑100 (MQ=255)
                 cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                 >  2:3862901/3‑101 (MQ=0)
                 cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                 <  1:2781782/99‑1 (MQ=0)
                  gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                >  1:1284586/2‑101 (MQ=0)
                     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACcg                                                                             >  2:3983283/1‑99 (MQ=0)
                     GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACcg                                                                             >  1:1684638/1‑99 (MQ=0)
                                                                       ctACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCC                           >  1:2138237/3‑101 (MQ=12)
                                                                            gcCCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      <  2:491365/99‑1 (MQ=0)
                                                                            GACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA                      >  1:2999774/1‑101 (MQ=0)
                                                                             ACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC                     >  1:3390478/1‑101 (MQ=0)
                                                                             ACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGAC                     <  2:2138098/101‑1 (MQ=0)
                                                                                    CGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG              >  2:3443970/1‑101 (MQ=0)
                                                                                    CGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCG              <  1:3987665/101‑1 (MQ=0)
                                                                                          CACGGACCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCga        <  2:3360383/101‑3 (MQ=12)
                                                                                          CACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA        <  2:2999553/101‑1 (MQ=0)
                                                                                           ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       >  1:3396661/1‑101 (MQ=0)
                                                                                           ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       <  1:190448/101‑1 (MQ=0)
                                                                                            CGGACCCGACCGATCCCACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG      <  1:2337750/101‑1 (MQ=0)
                                                                                               ACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAc   >  1:1202808/1‑100 (MQ=0)
                                                                                                CCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc  <  1:1611775/101‑3 (MQ=0)
                                                                        |||||||||||||||||||||||||                                                                                                    
TACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC.............................................................................................................................  <  NC_014034/222063‑221992
.................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG