New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	222019 =	1037 (4.730)	54 (0.250)	5/194	32.3	0.08	coding (638/2748 nt)	RCAP_rcc00185	hypothetical protein
	?	NC_014034	= 222126	233 (1.030)					coding (531/2748 nt)	RCAP_rcc00185	hypothetical protein
Rejected: Position hash score below cutoff.

ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222121‑222019 ....................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCC  <  NC_014034/222126‑222027                                                                                                                                                                                                                CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGCCCGATCCCACGGACCCC                                                                                                     >  1:270629/1‑101 (MQ=14)    CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     <  1:1440037/101‑1 (MQ=17)    CGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCC                                                                                                     <  1:1327579/101‑1 (MQ=14)     GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCc                                                                                                    >  1:234010/1‑100 (MQ=14)      ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCAC                                                                                                   <  2:3107213/101‑1 (MQ=1)       CCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACG                                                                                                  <  2:3304973/101‑1 (MQ=1)        CGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACca                                                                                                 >  2:4116347/1‑99 (MQ=11)        CGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCCACCGATCCCCCGGACCCCACcc                                                                                                 >  1:875828/1‑99 (MQ=2)          ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGCCCCCCCGGAC                                                                                               >  1:989948/1‑101 (MQ=0)          ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               <  1:3964262/101‑2 (MQ=11)          ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAt                                                                                               >  2:1611669/1‑100 (MQ=11)           TCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAtc                                                                                              >  2:4081057/1‑99 (MQ=14)            CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  1:4082981/101‑1 (MQ=14)            CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  2:3112359/101‑1 (MQ=14)            CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCC                                                                                             <  2:663481/101‑1 (MQ=14)              CACGGATCCGACCGGTCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGA                                                                                           <  1:4165101/101‑1 (MQ=12)              CACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGc                                                                                           >  1:786881/1‑100 (MQ=17)              CACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGA                                                                                           <  1:4034396/101‑1 (MQ=17)              CACGGACCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGA                                                                                           <  2:3360383/101‑1 (MQ=12)               ACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGAC                                                                                          <  2:272248/101‑1 (MQ=17)                CGGATCCGCCCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  1:3016744/101‑1 (MQ=12)                CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  2:2960407/101‑1 (MQ=17)                CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  1:1061773/101‑1 (MQ=17)                CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         >  1:1239796/1‑101 (MQ=17)                CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACC                                                                                         <  1:2449161/101‑1 (MQ=17)                CGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAACCCACC                                                                                         >  1:3253409/1‑101 (MQ=0)                  GATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGA                                                                                       >  2:1089327/1‑101 (MQ=17)                  GATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCCACCGA                                                                                       >  1:3440835/1‑101 (MQ=12)                   tcCCGACCGATCCCACGGCCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGAT                                                                                      <  2:1008447/99‑1 (MQ=12)                   ATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGACCCGACCGAT                                                                                      >  1:3933769/1‑101 (MQ=1)                        ACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCAC                                                                                 <  2:1198474/101‑1 (MQ=17)                         CCGACCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACG                                                                                <  1:3053644/101‑1 (MQ=12)                          CGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGG                                                                               <  1:924420/101‑1 (MQ=18)                           GATCCCACGGACCCGCCGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGA                                                                              <  2:2202059/101‑1 (MQ=16)                           GATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGA                                                                              >  1:2666295/1‑101 (MQ=17)                            ATCCCACGGACCCGACGGGCCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGAc                                                                             <  1:736895/101‑2 (MQ=16)                              CCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCC                                                                           <  2:1417383/101‑1 (MQ=37)                                 ACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGAC                                                                        <  2:203224/101‑1 (MQ=37)                                  CGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACC                                                                       <  1:3517275/101‑1 (MQ=37)                                   GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCa                                                                      >  1:4118884/1‑100 (MQ=25)                                   GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      <  1:3449097/101‑1 (MQ=25)                                   GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      <  2:3340704/101‑1 (MQ=37)                                   GGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCG                                                                      <  2:3051528/101‑1 (MQ=37)                                    GACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                     >  1:4164851/1‑101 (MQ=25)                                    GACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGA                                                                     >  1:2468774/1‑101 (MQ=25)                                     gCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGAT                                                                    <  2:2865930/100‑1 (MQ=25)                                     cCCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGAT                                                                    <  1:4395265/100‑1 (MQ=25)                                     ACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGAT                                                                    >  2:2866554/1‑101 (MQ=25)                                      CCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATC                                                                   <  1:342811/101‑1 (MQ=25)                                        CGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCC                                                                 <  1:734787/101‑1 (MQ=25)                                         GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                <  1:3164349/101‑1 (MQ=38)                                         GACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA                                                                <  1:3489312/101‑1 (MQ=38)                                           CGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG                                                              >  1:2669204/1‑101 (MQ=25)                                             GACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGA                                                            <  1:130816/101‑1 (MQ=37)                                                                                                                                                                                                             ACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC....................................................................................................  <  NC_014034/222121‑222019 ....................................................................................................CCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCC  <  NC_014034/222126‑222027 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG