New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 222085 =282 (1.730)34 (0.210) 10/144 22.6 0.13 coding (572/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222110 177 (0.780)coding (547/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA.........................................................................................................................  <  NC_014034/222135‑222085
...............................................................................CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222110‑222018
                                                   ||||||||||||||||||||||||||||                                                                                             
naccgntCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCA                                                                         <  1:1036680/94‑1 (MQ=0)
  ccgatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCCACCGATCCCACG                                                                       >  1:1083305/6‑101 (MQ=0)
    gatCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGCACCCGACCGATCCCACGGA                                                                     >  1:785139/4‑101 (MQ=0)
      tCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                                                                   <  2:3397751/100‑1 (MQ=2)
      tCCCACGGGCCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                                                                   <  2:3011420/100‑1 (MQ=9)
      tCCCACGGACCCTACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                                                                   <  2:3396424/100‑1 (MQ=2)
      tCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACC                                                                   <  2:4384852/100‑1 (MQ=17)
       ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCC                                                                  <  2:3440596/98‑1 (MQ=12)
        cccCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG                                                                 <  2:902603/98‑1 (MQ=9)
        CCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACCGACCCG                                                                 >  1:3090814/1‑101 (MQ=12)
        CCACGGACCCGACCGATCCCACGGATCCGACAGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCG                                                                 >  1:3993336/1‑101 (MQ=12)
         CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGc                                                                >  1:2632383/1‑100 (MQ=2)
         CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGc                                                                >  1:3172766/1‑100 (MQ=2)
         CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGA                                                                <  2:3828394/101‑1 (MQ=2)
         CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGA                                                                >  1:255270/1‑101 (MQ=2)
          cCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                               <  2:1226149/100‑1 (MQ=14)
          ACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                                               >  1:1811917/1‑101 (MQ=17)
          ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                               >  1:3602247/1‑101 (MQ=17)
          ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGAC                                                               <  1:2890362/101‑1 (MQ=17)
           tGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  1:1879254/100‑2 (MQ=2)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  1:1020424/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  2:3973232/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  1:1573937/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  2:3090590/101‑2 (MQ=14)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACc                                                              <  2:2436429/101‑2 (MQ=11)
           CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATACCACGGACCCGACc                                                              >  2:1941487/1‑100 (MQ=9)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCCCGGACCCGACcg                                                             >  1:682210/1‑99 (MQ=2)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg                                                             >  2:317798/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg                                                             <  1:1369696/101‑3 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg                                                             >  2:4416878/1‑99 (MQ=11)
            GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACcg                                                             >  2:535732/1‑99 (MQ=11)
             GACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGA                                                            >  2:2352280/1‑101 (MQ=0)
              ACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAC                                                           >  2:1904695/1‑101 (MQ=2)
                 CGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCc                                                        >  2:3898415/1‑100 (MQ=0)
                                                                       CGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCc  <  1:1327579/101‑2 (MQ=14)
                                                   ||||||||||||||||||||||||||||                                                                                             
CACCAGCCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGA.........................................................................................................................  <  NC_014034/222135‑222085
...............................................................................CCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222110‑222018

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG