New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2222811 =181 (0.870)2 (0.010) 2/184 34.7 0.01 coding (1976/3087 nt) RCAP_rcc02063 M10 family peptidase
?NC_014034 3332335 = 207 (0.920)coding (1296/1962 nt) ccmF cytochrome c‑type biogenesis protein CcmF
Rejected: Position hash score below cutoff.

GCCGATGCCGACCGCATCGATCTGGGCGCGGGCGACGACATCTTCACCGACACCGCCGACACGGGCGCCGACACGGTTCTGGGCGGGCTTGGCAACGAGGTGCTGAC....................................................................................................  <  NC_014034/2222917‑2222811
...................................................................................................GTGCTGACGCTGGCGGTGCTGGCGCTGGTCTGGGTGATGGCGACGGGGCGGCCGATGCTGGCGCTTGGCGCGGCGGGGCTGGGCGCCTGGATCCTTTTTGGCGCCCTG  >  NC_014034/3332335‑3332434
                                                                                                                                                                                                               
                               GCGACGACATCTTCACCGACACCGCCGACACGGGCGCCGACACGGTTCTGGGCGGGCTTGGCAACGAGGTGCTGACGCTGGCGGTGCTGGCGCTGGTCTGG                                                                             >  1:3498866/1‑101 (MQ=255)
                                                                 CGCCGACACGGTTCTGGGCGGGCTTGGCAACGAGGTGCTGACGCTGGCGGTGCTGGCGCTGGTCTGGGTGATGGCGACGGGGCGGCCGATGCTGGCGCTTG                                           <  2:3498626/101‑1 (MQ=39)
                                                                                                                                                                                                               
GCCGATGCCGACCGCATCGATCTGGGCGCGGGCGACGACATCTTCACCGACACCGCCGACACGGGCGCCGACACGGTTCTGGGCGGGCTTGGCAACGAGGTGCTGAC....................................................................................................  <  NC_014034/2222917‑2222811
...................................................................................................GTGCTGACGCTGGCGGTGCTGGCGCTGGTCTGGGTGATGGCGACGGGGCGGCCGATGCTGGCGCTTGGCGCGGCGGGGCTGGGCGCCTGGATCCTTTTTGGCGCCCTG  >  NC_014034/3332335‑3332434

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG