New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2232462223 (1.060)2 (0.010) 2/186 34.9 0.01 coding (2046/2772 nt) RCAP_rcc02068 ice nucleation protein repeat family protein
?NC_014034 3625405 = 206 (0.910)coding (257/714 nt) RCAP_rcc03424 winged helix family two component transcriptional regulator
Rejected: Position hash score below cutoff.

TGTCATCGGTGCCGAGCCCCGCCAGAGCCGCCGCCCCGAGCGCCTTGACCTGCGCCGTGGTCAGAACGGTGTTGATCTGCGTCGTGGTCAGGCCGGTCAGCTGCGCC....................................................................................................  >  NC_014034/2232356‑2232462
....................................................................................................CTGCGCCCGGCCCGAGATGATGATGATCGCCGCCCCCGATTCGAGTGCCAGCCGATGCACCAGCGCCAGACCGTCACGGTCGGGCAGGCCCAGATCAACCAGACAGA  >  NC_014034/3625405‑3625504
                                                                                                                                                                                                               
                                      AGCGCCTTGACCTGCGCCGTGGTCAGAACGGTGTTGATCTGCGTCGTGGTCAGGCCGGTCAGCTGCGCCCGGCCCGAGATGATGATGATCGCCGCCCCCGA                                                                      >  2:3727282/1‑101 (MQ=255)
                                                              AGAACGGTGTTGATCTGGGTCGTGGTCAGGCCGGTCAGCTGCGCCCGGCCCGAGATGATGATGATCGCCGCCCCCGATTCGAGTGCCAGCCGATGCACCAG                                              <  1:3727535/101‑1 (MQ=255)
                                                                                                                                                                                                               
TGTCATCGGTGCCGAGCCCCGCCAGAGCCGCCGCCCCGAGCGCCTTGACCTGCGCCGTGGTCAGAACGGTGTTGATCTGCGTCGTGGTCAGGCCGGTCAGCTGCGCC....................................................................................................  >  NC_014034/2232356‑2232462
....................................................................................................CTGCGCCCGGCCCGAGATGATGATGATCGCCGCCCCCGATTCGAGTGCCAGCCGATGCACCAGCGCCAGACCGTCACGGTCGGGCAGGCCCAGATCAACCAGACAGA  >  NC_014034/3625405‑3625504

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 38 ≤  ATCG