New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2250964	198 (0.950)	2 (0.010)	2/184	34.7	0.01	intergenic (+13/‑28)	RCAP_rcc02081/ribF	MaoC family protein/riboflavin biosynthesis protein RibF
	?	NC_014034	= 2749747	231 (1.020)					coding (443/480 nt)	RCAP_rcc02557	uncharacterized protein family UPF0262
Rejected: Position hash score below cutoff.

AGCGTCGGGTCACCCTTGAAACCCGCTGCCGCGTGGGCGATACGGTGGTGATCGAGGGCGAAGCGCAGGTTCTGGCGCCCGCCTGCAAGCACTGACACGACCGGCGGC....................................................................................................  >  NC_014034/2250857‑2250964 ....................................................................................................CCGGCGGCTCTTCACCCTTGTTTGCGTGCTGACCCCGGTAAGCTGATGGGCAAGCTTCCCAACGCCGTCCTGTTCTGCTGCGACCATAACGCGACGCGCTCGCCGATG  <  NC_014034/2749747‑2749648                                                                                                                                                                                                                                                             GGTGGTGATCGAGGGCGAAGCGCAGGTTCTGGCGCCCGCCTGCAAGCACTGACACGACCGGCGGCTCTTCACCCTTGTTTGCGTGCTGACCCCGGTAAGCT                                                                  >  2:3506915/1‑101 (MQ=255)                                                  GATCGAGGGCGAAGCGCAGGTTCTGGCGCCCGCCTGCAAGCACTGACACGACCGGCGGCTCTTCACCCTTGTTTGCGTGCTGACCCCGGTAAGCTGATGGG                                                            <  1:3507156/101‑1 (MQ=255)                                                                                                                                                                                                                  AGCGTCGGGTCACCCTTGAAACCCGCTGCCGCGTGGGCGATACGGTGGTGATCGAGGGCGAAGCGCAGGTTCTGGCGCCCGCCTGCAAGCACTGACACGACCGGCGGC....................................................................................................  >  NC_014034/2250857‑2250964 ....................................................................................................CCGGCGGCTCTTCACCCTTGTTTGCGTGCTGACCCCGGTAAGCTGATGGGCAAGCTTCCCAACGCCGTCCTGTTCTGCTGCGACCATAACGCGACGCGCTCGCCGATG  <  NC_014034/2749747‑2749648 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG