New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	40 (0.180)	39 (0.180)	6/196	31.6	0.36	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2341510	97 (0.430)					intergenic (‑61/+9)	purQ/purS	phosphoribosylformylglycinamidine synthase subunit PurQ/phosphoribosylformylglycinamidine synthase subunit PurS
Rejected: Position hash score below cutoff.

TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG...................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTG  <  NC_014034/2341510‑2341412                                                                                                                                                                                                             GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGG                                                                                                    <  1:1082643/101‑1 (MQ=1)    GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGG                                                                                                   <  2:3271453/101‑1 (MQ=1)    GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGG                                                                                                   <  1:601698/101‑1 (MQ=1)    GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGG                                                                                                   >  1:4394266/1‑101 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                  <  2:4400030/101‑1 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                  <  1:2030083/101‑1 (MQ=1)     CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGG                                                                                                  >  1:3903213/1‑101 (MQ=1)      TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGG                                                                                                 <  2:3436649/101‑1 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGCCGGGGGg                                                                                                >  2:3824296/1‑100 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGgg                                                                                               >  2:1786215/1‑99 (MQ=1)          CCTCCGCCAAGGGCGGCACCGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                             <  2:4346917/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                             <  2:3974262/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                             <  1:73698/101‑4 (MQ=1)           CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCcc                                                                                            >  1:1961494/1‑99 (MQ=1)            TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccgc                                                                                           <  2:3792962/101‑6 (MQ=11)            TCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtccgc                                                                                           <  2:4403295/101‑6 (MQ=11)              CGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCC                                                                                         <  2:4090765/101‑1 (MQ=32)               GCCAAGGTCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                        <  2:3296802/101‑1 (MQ=17)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                        <  1:1887689/101‑1 (MQ=32)               GCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCC                                                                                        <  2:3294478/101‑1 (MQ=32)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCTGGGGCTCCGCCCCC                                                                                       <  2:2661408/101‑1 (MQ=14)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCCGGCCCC                                                                                       >  2:2103340/1‑101 (MQ=17)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       <  2:1339429/101‑1 (MQ=32)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       <  2:352069/101‑1 (MQ=32)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                       <  2:1143206/101‑1 (MQ=32)                   AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGca                                                                                    <  2:1272127/101‑3 (MQ=32)                     GGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACC                                                                                  <  2:4376869/101‑1 (MQ=32)                      GCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCC                                                                                 <  1:358669/101‑1 (MQ=32)                       CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCC                                                                                <  2:1772347/101‑1 (MQ=32)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCC                                                                               <  1:2103477/101‑1 (MQ=32)                        GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCC                                                                               <  1:4026583/101‑1 (MQ=32)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                              <  2:2590454/101‑1 (MQ=32)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                              <  2:1389899/101‑1 (MQ=32)                             CGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGT                                                                          <  2:3595419/101‑1 (MQ=32)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                      <  1:1428380/101‑1 (MQ=32)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                      <  2:455498/101‑1 (MQ=32)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                      <  2:2730419/101‑1 (MQ=32)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                      <  1:210484/101‑1 (MQ=32)                                    CAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGcg                                                                   <  1:4183025/101‑3 (MQ=1)                                                                                                                                                                                                           TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG...................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTG  <  NC_014034/2341510‑2341412 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG