New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	243573 =	197 (0.920)	51 (0.240)	12/190	26.3	0.33	intergenic (+2/+118)	mogA/ubiG	molybdopterin biosynthesis mog protein/3‑demethylubiquinone‑9 3‑O‑methyltransferase
	?	NC_014034	2600957 =	7 (0.030)					intergenic (+19/‑122)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GCCCCCAGGCCCCCGGGACATTTGAGGCAAGATAAAACAGGCTCCTTTATCTTGCCTCAAATATCCCGGGGGTGAATGGCGAAGCCAGAGGGGGCAGCGCCCCCT....................................................................................................  <  NC_014034/243677‑243573 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACA  >  NC_014034/2600957‑2601056                                                                                                                                                                                                                                                                                           ccaaaggccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTT                              >  1:1550426/11‑101 (MQ=2)                                                                              caaaggccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTT                             <  2:2849065/92‑1 (MQ=2)                                                                               aaaggccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTG                            >  2:638660/9‑101 (MQ=11)                                                                                aaggccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGG                           >  2:2708089/8‑101 (MQ=11)                                                                                  ggccagGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                         <  1:3902797/95‑1 (MQ=0)                                                                                  ggccaAGAGGGGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                         <  1:1328676/96‑1 (MQ=2)                                                                                  gccaaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCT                         <  2:2775149/96‑1 (MQ=1)                                                                                   gccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGGTG                        >  1:2480414/5‑101 (MQ=11)                                                                                   gccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTG                        >  2:2308210/5‑101 (MQ=11)                                                                                    ccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTTTTTGGCTGC                       >  2:1091868/4‑101 (MQ=2)                                                                                    ccaAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                       <  1:1680272/98‑1 (MQ=11)                                                                                    ccaAGAGGGGGCAGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGC                       <  2:184474/98‑1 (MQ=11)                                                                                     caaggGGGGGCGGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCG                      <  2:464377/96‑1 (MQ=14)                                                                                      aAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGGTGCcg                     >  1:3330166/2‑99 (MQ=1)                                                                                      aAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTTCGG                     >  2:1539855/2‑101 (MQ=1)                                                                                      aAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                     >  1:411133/2‑101 (MQ=1)                                                                                      aAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                     <  2:2731751/100‑1 (MQ=1)                                                                                      aAGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGG                     >  2:1036040/2‑101 (MQ=1)                                                                                       AGAGGGGGCGGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                    <  1:4276275/101‑1 (MQ=17)                                                                                       AGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                    >  2:2159973/1‑101 (MQ=1)                                                                                       AGAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGC                    >  1:2475465/1‑101 (MQ=1)                                                                                        ggGGGGGCCGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                   <  1:947711/99‑1 (MQ=0)                                                                                        ggGGGGCCAGCCCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                   <  2:3804767/99‑1 (MQ=0)                                                                                        GAGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCG                   >  2:2213723/1‑101 (MQ=1)                                                                                         gGGGGACAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                  <  2:2784065/100‑1 (MQ=1)                                                                                         AGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGCTGCGGCGC                  >  2:1935756/1‑101 (MQ=1)                                                                                         AGGGGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGC                  >  2:3345049/1‑101 (MQ=1)                                                                                          ggccccccccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                 <  2:3475794/91‑1 (MQ=2)                                                                                          GGGGGCCGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                 <  2:3902749/101‑1 (MQ=0)                                                                                          GGGGGCCGCCCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCA                 <  2:1373577/101‑1 (MQ=0)                                                                                            ggccgcccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC               <  1:2221309/93‑1 (MQ=9)                                                                                            gcgcggccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC               <  2:3422221/93‑1 (MQ=14)                                                                                            GGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGC               >  2:3519532/1‑101 (MQ=1)                                                                                            GGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC               >  1:2444409/1‑101 (MQ=1)                                                                                            GGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGC               <  1:2008294/101‑1 (MQ=1)                                                                                            GGGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCCTGTTTGGCTGGGGCGCCGC               >  1:2748334/1‑101 (MQ=0)                                                                                             gccgcccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCG              <  2:2691244/94‑1 (MQ=2)                                                                                             GGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGGGGGGCAGCG              >  2:1875840/1‑101 (MQ=0)                                                                                             GGCAGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCG              >  1:1727956/1‑101 (MQ=1)                                                                                               gccccCCCCCCCCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGC            <  2:3924212/96‑1 (MQ=2)                                                                                                gcccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACCCCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT           <  1:3488826/97‑1 (MQ=2)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT           >  2:1564365/1‑101 (MQ=1)                                                                                                AGCGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCT           >  2:1376722/1‑101 (MQ=1)                                                                                                 gccCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTA          <  1:2707709/98‑1 (MQ=11)                                                                                                  CGCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA         <  1:638728/101‑1 (MQ=1)                                                                                                  CGCCCCCGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAA         <  1:4318304/101‑1 (MQ=1)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGGGGCGCAGCGGCTAAT        >  2:1110383/1‑101 (MQ=1)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT        >  1:4130125/1‑101 (MQ=1)                                                                                                   GCCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAT        >  2:4209195/1‑101 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC       >  1:1446566/1‑101 (MQ=1)                                                                                                    CCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATC       <  2:732125/101‑1 (MQ=1)                                                                                                                                                                                                               GCCCCCAGGCCCCCGGGACATTTGAGGCAAGATAAAACAGGCTCCTTTATCTTGCCTCAAATATCCCGGGGGTGAATGGCGAAGCCAGAGGGGGCAGCGCCCCCT....................................................................................................  <  NC_014034/243677‑243573 ....................................................................................................CCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCAGACA  >  NC_014034/2600957‑2601056 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG