New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2486558	230 (1.080)	46 (0.220)	4/188	32.8	0.28	intergenic (‑186/+8)	RCAP_rcc02312/soxG	hypothetical protein/sarcosine oxidase subunit gamma
	?	NC_014034	= 2600943	1 (0.000)					intergenic (+5/‑136)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844                                                                                                                                                                                                                                                                                                gcggaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGG                           <  2:3376378/93‑1 (MQ=1)                                                                                  gcgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGA                          <  2:1821377/94‑1 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         >  2:1439911/7‑101 (MQ=1)                                                                                   cgaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAA                         <  2:2962821/95‑1 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  2:106601/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:1865277/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:1632469/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  1:1007707/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  2:482636/6‑101 (MQ=1)                                                                                    gaagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAG                        >  2:3846544/6‑101 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       <  1:3352598/97‑1 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       <  1:2768641/97‑1 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       >  1:2736017/5‑101 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       >  1:2339738/5‑101 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       <  1:1545095/97‑1 (MQ=1)                                                                                     aagcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGA                       >  2:3737302/5‑101 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      >  1:2653115/4‑101 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      >  2:1781560/4‑101 (MQ=1)                                                                                      agcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:1042565/98‑1 (MQ=1)                                                                                      agcCGGGGGGCAGACCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAA                      <  2:2587881/98‑1 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                     <  2:1154956/99‑1 (MQ=1)                                                                                       gcCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAG                     >  1:3452705/3‑101 (MQ=1)                                                                                        cCGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGC                    <  1:981544/100‑1 (MQ=1)                                                                                         nGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGANNANGCn                   >  1:1831462/2‑100 (MQ=1)                                                                                         gGGGGGGCAGCCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   <  1:1551736/100‑1 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   <  2:1277049/101‑1 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCG                   >  2:1963757/1‑101 (MQ=1)                                                                                         CGGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGCCCTCGGACGGGAAGGAGCG                   >  1:1249898/1‑101 (MQ=0)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  1:3456140/1‑101 (MQ=1)                                                                                          GGGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGC                  >  2:1221863/1‑101 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                 >  1:1298877/1‑101 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                 <  2:2177369/101‑1 (MQ=1)                                                                                           GGGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCG                 <  2:2793324/101‑1 (MQ=1)                                                                                            GGGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGC                >  1:3139658/1‑101 (MQ=1)                                                                                             GGGCAGAGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCC               <  1:2437751/101‑1 (MQ=1)                                                                                              GGCAGCCCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCC              <  1:2975436/101‑1 (MQ=1)                                                                                               ggccCGCCCCCGGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCG             <  2:876355/97‑1 (MQ=0)                                                                                                 agaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCA           <  2:4003418/98‑1 (MQ=1)                                                                                                 agaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCA           >  2:397666/4‑101 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          >  1:1921924/3‑101 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  2:4286471/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  1:2478824/99‑1 (MQ=1)                                                                                                  gaGCCCCCCGTCCGTCAGATCCCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCAC          <  1:570262/99‑1 (MQ=1)                                                                                                   aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         >  2:2250945/2‑101 (MQ=1)                                                                                                   aGCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACG         >  1:3380892/2‑101 (MQ=1)                                                                                                    GCCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGG        >  1:203381/1‑101 (MQ=1)                                                                                                                                                                                                                CCGGGCAAGTCACCCCCGGGATATTCATGGCAAGATGAAGGAGGCGTGTTTCATCTTGCCATAAATATCCCGGGGGGAGTCCGCAGGACGGGGGGCAGCGCCCCCC....................................................................................................  >  NC_014034/2486453‑2486558 ....................................................................................................CCCCCCGTCCGTCAGATCTCGGCAAGAAGGCGTTTCGCTTCGTCGCGGCAATCGATCAGCGGCGTGCGGTCCTCGGACGGGAAGAAGCGCGCCCGCACGGCGGTGG  <  NC_014034/2600943‑2600844 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG