New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2493986 =	158 (0.780)	30 (0.150)	7/176	28.7	0.16	intergenic (+34/‑208)	RCAP_rcc02319/RCAP_rcc02320	hypothetical protein/hypothetical protein
	?	NC_014034	3011299 =	154 (0.680)					intergenic (+98/+44)	purK/RCAP_rcc02822	phosphoribosylaminoimidazole carboxylase ATPase subunit/lipase
Rejected: Position hash score below cutoff.

ATCTTGCTGCAAATATCCCGGGGGG....................................................................................................  <  NC_014034/2494010‑2493986 ...............TCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACCGGCTCGAACT  >  NC_014034/3011299‑3011398                                                                                                                               accttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGC                          >  2:3402938/10‑101 (MQ=2)  ccttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCC                         >  1:2973579/9‑101 (MQ=2)   cttgggaCAAATATCCCGGGGGGAGACTTGCCGGAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCC                        >  1:371499/8‑101 (MQ=2)   cttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCCGCCGCTGCAAGGCCGCGCCC                        >  2:4417777/8‑101 (MQ=2)   cttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCCGCCGCTGCAAGGCCGCGCCC                        >  1:4376899/8‑101 (MQ=2)    ttgggaaAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTCCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCC                       <  2:1870437/94‑1 (MQ=0)    ttgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCC                       >  1:1916686/7‑101 (MQ=11)     tgggaaAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  2:2376995/95‑1 (MQ=0)     tgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      >  2:580321/6‑101 (MQ=11)     tgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      >  2:18417/6‑101 (MQ=11)     tgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  1:998754/96‑1 (MQ=11)     tgggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      >  1:2937364/6‑101 (MQ=11)     tgggaCAAATACCCGGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  2:3187602/96‑1 (MQ=2)     tggaaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCA                      <  2:3881960/96‑1 (MQ=11)      gggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAG                     <  1:4170000/97‑1 (MQ=11)       ggaCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGC                    >  1:2345687/4‑101 (MQ=11)        gaCAAATACCCGGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCCCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCC                   <  2:3623407/99‑1 (MQ=2)         aCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCC                  >  2:1861339/2‑101 (MQ=11)         aCAAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCCCTGCACGGCCGCGCCCCAcgcc                  >  1:232493/2‑97 (MQ=2)          CAAATACCCGGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCG                 <  1:245215/101‑1 (MQ=0)           AAATATCGCGGGGGGAGACTGGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCCCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                <  1:2147362/101‑1 (MQ=0)           AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGG                >  1:2808094/1‑101 (MQ=1)           AAATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCCCGCCCCAGagatc                >  2:2599721/1‑96 (MQ=0)            AATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               >  2:1315440/1‑101 (MQ=1)            AATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGC               >  1:719590/1‑101 (MQ=1)             ATATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCGCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCc              >  2:3855287/1‑100 (MQ=1)              TATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCAC             >  1:3149632/1‑101 (MQ=1)              TATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCAC             >  1:20426/1‑101 (MQ=1)               ATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCCGCCCGGCACC            >  2:1534682/1‑101 (MQ=1)               ATCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGATGCAAGGCCGCGCCCCAGCCCGGGACC            >  2:2792568/1‑101 (MQ=0)                                                                                                                               ATCTTGCTGCAAATATCCCGGGGGG....................................................................................................  <  NC_014034/2494010‑2493986 ...............TCCCGGGGGGAGACTTGCCGCAGGCAAGAGGGGGGCAGCGCCCCCCTGCCCGGCTCACGGCAGGGCCAGCCGCTGCAAGGCCGCGCCCCAGCCCGGCACCGGCTCGAACT  >  NC_014034/3011299‑3011398 Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG