New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2600949	0 (0.000)	70 (0.330)	10/190	27.7	0.40	intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3609076 =	209 (0.920)					intergenic (+15/‑156)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110                                                                                                                                                     CCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGC                                      <  1:203381/101‑1 (MQ=1)       CGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCT                                     <  1:3380892/101‑1 (MQ=1)       CGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCT                                     <  2:2250945/101‑1 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGGGATCTGACGGACGGGGGGCTC                                    >  1:570262/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    >  2:4286471/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    >  1:2478824/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    <  1:1921924/101‑1 (MQ=1)         TGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCT                                   >  2:4003418/1‑101 (MQ=1)         TGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCT                                   <  2:397666/101‑1 (MQ=1)           CGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACCGGGGGCgggcc                                 >  2:876355/1‑96 (MQ=0)             GGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               >  1:2437751/1‑101 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  1:3139658/101‑1 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             >  2:2177369/1‑101 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             <  1:1298877/101‑1 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             >  2:2793324/1‑101 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  1:3456140/101‑2 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  2:1221863/101‑2 (MQ=1)                 nGCNTNNTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcn                           <  1:1831462/100‑3 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCTGCCCCCcc                           >  1:1551736/1‑99 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           >  2:1277049/1‑99 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  2:1963757/101‑3 (MQ=1)                 CGCTCCTTCCCGTCCGAGGGCCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  1:1249898/101‑3 (MQ=0)                  GCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcgg                          >  1:981544/1‑98 (MQ=1)                   CTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggc                         <  1:3452705/101‑5 (MQ=1)                   CTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggc                         >  2:1154956/1‑97 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGTCTGCCCCCcggct                        >  2:2587881/1‑96 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        <  2:1781560/101‑6 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        <  1:2653115/101‑6 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        >  2:1042565/1‑96 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGAACGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCAAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        <  1:3673748/101‑6 (MQ=0)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  1:3352598/1‑95 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  1:2768641/1‑95 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       <  1:2736017/101‑7 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       <  1:2339738/101‑7 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  1:1545095/1‑95 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       <  2:3737302/101‑7 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:3846544/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:106601/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:1007707/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:1632469/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:1865277/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:482636/101‑8 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     <  2:1439911/101‑9 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     >  2:2962821/1‑93 (MQ=1)                        TCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcgc                    >  2:1821377/1‑92 (MQ=1)                         CCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttccgc                   >  2:3376378/1‑91 (MQ=1)                            GTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCC                >  2:3737248/1‑101 (MQ=1)                            GTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCC                >  1:3209973/1‑101 (MQ=1)                            GTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCC                >  1:929101/1‑101 (MQ=1)                              CCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCC              >  1:3409560/1‑101 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  2:2805889/101‑1 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  2:2013969/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  2:2858088/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:124447/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:3621922/1‑101 (MQ=1)                                 AGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGG           <  2:3883388/101‑1 (MQ=1)                                  GGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGG          <  2:2976390/101‑1 (MQ=1)                                   GACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGA         >  2:255057/1‑101 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  2:947410/101‑1 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        >  2:358280/1‑101 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  2:3217534/101‑1 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  1:3010710/101‑1 (MQ=1)                                     CCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATA       <  1:3887393/101‑1 (MQ=1)                                      CGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATAT      >  2:188999/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     <  1:1762029/101‑1 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCAGGCTTCGCTCCCCCCGGGATATT     >  2:1087542/1‑101 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    >  2:4437489/1‑101 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:1182194/101‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:4436149/101‑1 (MQ=1)                                          CGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTGc  <  1:1815329/101‑2 (MQ=1)                                                                                                                                                CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG