New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2600952 =	0 (0.000)	52 (0.240)	9/190	28.5	0.48	intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	= 3254805	112 (0.500)					intergenic (+130/‑53)	glpX/recJ	fructose‑1,6‑bisphosphatase/single‑stranded‑DNA‑specific exonuclease RecJ
Rejected: Position hash score below cutoff.

TGTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG..................................................................................................  <  NC_014034/2601056‑2600952 ....................................................................................................AGGGGGCGCCGCCCCCTCTTTGCCTGTCGGCAAATTCCCCCCCGGGATATTTCGGCCAAGGTGAAACGGCCCCGTTTTCCTTGGCAAAATACGCGCAGGGGGT  <  NC_014034/3254805‑3254708                                                                                                                                                                                                                  GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                   >  2:732125/1‑101 (MQ=1)      GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                   <  1:1446566/101‑1 (MQ=1)       ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                  <  2:4209195/101‑1 (MQ=1)       ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                  <  1:4130125/101‑1 (MQ=1)       ATTAGCCGCTGCGCCCCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                  <  2:1110383/101‑1 (MQ=1)        TTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGCG                                                                                                 >  1:4318304/1‑101 (MQ=1)        TTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCG                                                                                                 >  1:638728/1‑101 (MQ=1)         TAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGC                                                                                                >  1:2707709/1‑101 (MQ=11)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCCGGGGGGCg                                                                                               >  1:2303066/1‑100 (MQ=2)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCt                                                                                               <  2:1376722/101‑2 (MQ=1)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCt                                                                                               <  2:1564365/101‑2 (MQ=1)          AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGGGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggc                                                                                               >  1:3488826/1‑97 (MQ=2)           GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGGGGGGGggggc                                                                                              >  2:3924212/1‑96 (MQ=2)             CGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggcggc                                                                                            >  2:2691244/1‑94 (MQ=2)             CGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCC                                                                                            <  1:1727956/101‑1 (MQ=1)             CGCTGCCCCCCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCC                                                                                            <  2:1875840/101‑1 (MQ=0)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggcggcc                                                                                           >  1:2221309/1‑93 (MQ=9)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCgc                                                                                           >  2:3422221/1‑99 (MQ=14)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                           >  1:2008294/1‑101 (MQ=1)              GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                           <  1:2444409/101‑1 (MQ=1)              GCTGCCCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                           <  2:3519532/101‑1 (MQ=1)                TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGggggggggcc                                                                                         >  2:3475794/1‑91 (MQ=2)                TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCC                                                                                         >  2:3902749/1‑101 (MQ=0)                TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCC                                                                                         >  2:1373577/1‑101 (MQ=0)                 GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGTCCCCc                                                                                        >  2:2784065/1‑100 (MQ=1)                 GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCT                                                                                        <  2:3345049/101‑1 (MQ=1)                 GCGCCGCAGCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCT                                                                                        <  2:1935756/101‑1 (MQ=1)                  CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCCcc                                                                                       >  1:947711/1‑99 (MQ=0)                  CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTC                                                                                       <  2:2213723/101‑1 (MQ=1)                   GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCCCCCTCT                                                                                      >  1:4276275/1‑101 (MQ=17)                   GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCT                                                                                      <  2:2159973/101‑1 (MQ=1)                   GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCT                                                                                      <  1:2475465/101‑1 (MQ=1)                    cgGCACCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTT                                                                                     <  1:3330166/99‑1 (MQ=1)                    CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTT                                                                                     >  2:2731751/1‑101 (MQ=1)                    CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTT                                                                                     <  2:1036040/101‑1 (MQ=1)                    CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTT                                                                                     <  1:411133/101‑1 (MQ=1)                    CCGAAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTT                                                                                     <  2:1539855/101‑1 (MQ=1)                     CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCCCTTg                                                                                    >  2:464377/1‑100 (MQ=14)                      GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCCCCTCTTgg                                                                                   >  2:184474/1‑99 (MQ=11)                      GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTgg                                                                                   >  1:1680272/1‑99 (MQ=11)                      GCAGCCAAAAAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTgg                                                                                   <  2:1091868/101‑3 (MQ=2)                       cacCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGC                                                                                  <  1:2480414/98‑1 (MQ=11)                       CAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGC                                                                                  <  2:2308210/101‑1 (MQ=11)                        AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGCCCCCTCTTGGCC                                                                                 >  1:1328676/1‑101 (MQ=2)                        AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTTGgc                                                                                 >  2:2775149/1‑99 (MQ=1)                        AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCCTGGCC                                                                                 >  1:3902797/1‑101 (MQ=0)                          CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTt                                                                               <  2:2708089/101‑2 (MQ=11)                           CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTtt                                                                              <  2:638660/101‑3 (MQ=11)                            AAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTttg                                                                             >  2:2849065/1‑98 (MQ=2)                             AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTGGCCTttgg                                                                            <  1:1550426/101‑5 (MQ=2)                              ACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCTCTTTGCCcttggc                                                                           >  2:3352361/1‑95 (MQ=0)                                      GCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCTCTTTGCCTTTGGGCAAttcac                                                                   >  2:4089758/1‑96 (MQ=255)                                                                                                                                                                                                             TGTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG..................................................................................................  <  NC_014034/2601056‑2600952 ....................................................................................................AGGGGGCGCCGCCCCCTCTTTGCCTGTCGGCAAATTCCCCCCCGGGATATTTCGGCCAAGGTGAAACGGCCCCGTTTTCCTTGGCAAAATACGCGCAGGGGGT  <  NC_014034/3254805‑3254708 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG