New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2615552 =212 (1.010)3 (0.010) 3/186 33.7 0.01 coding (1323/1734 nt) RCAP_rcc02438 AMP‑dependent synthetase and ligase
?NC_014034 2891753 = 199 (0.880)coding (1150/1545 nt) thiP thiamine ABC transporter permease
Rejected: Position hash score below cutoff.

AGCCCGACCGCAGCCGGGACAGTTTCGGGGCGCGGATCGCGAACGAGGATGGCCCGGCCTTCCTGCGCACCGGCGATCTGGGGCAGATGCGGGGCGAGGGGCTGGCC....................................................................................................  <  NC_014034/2615658‑2615552
....................................................................................................GCTGGCCCTGCCGGTGACGCTTTTGACCAATGCCGCGCTCAGCCTGCCCTTTGCGCTGCGCCTGCTTCTGCCCGAGGTCCGCGCGCTGCAGGCCGATTACGACCGGC  >  NC_014034/2891753‑2891852
                                                                                                                                                                                                               
          CAGCCGGGACAGTTTCGGGGCGCGGATCGCGAACGAGGATGGCCCCGCCTTCCTGCGCACCGGCGATCTGGGGCAGATGCGGGGCGCGGGGCTGGCCCTcg                                                                                                  >  2:3253557/1‑99 (MQ=255)
                                        GAACGAGGATGGCCCGGCCTTCCTGCGCACCGGCGATCTGGGGCAGATGCGGGGCGAGGGGCTGGCCCTGCCGGTGACGCTTTTGACCAATGACGCGCTCA                                                                    >  2:4321425/1‑101 (MQ=255)
                                                                         gGATCTGGGGCAGATGCGGGGCGAGGGGCTGGCCCTGCCGGTGACGCTTTTGACCAATGCCGCGCTCAGCCTGCCCTTTGCGCTGCGCCTGCTTCTGCCCG                                   <  1:4321694/100‑1 (MQ=255)
                                                                                                                                                                                                               
AGCCCGACCGCAGCCGGGACAGTTTCGGGGCGCGGATCGCGAACGAGGATGGCCCGGCCTTCCTGCGCACCGGCGATCTGGGGCAGATGCGGGGCGAGGGGCTGGCC....................................................................................................  <  NC_014034/2615658‑2615552
....................................................................................................GCTGGCCCTGCCGGTGACGCTTTTGACCAATGCCGCGCTCAGCCTGCCCTTTGCGCTGCGCCTGCTTCTGCCCGAGGTCCGCGCGCTGCAGGCCGATTACGACCGGC  >  NC_014034/2891753‑2891852

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 38 ≤  ATCG