New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2617264213 (1.040)2 (0.010) 2/182 34.5 0.01 coding (363/756 nt) RCAP_rcc02439 hypothetical protein
?NC_014034 2705013 = 203 (0.900)coding (858/2049 nt) RCAP_rcc02519 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

GCCCATCGTCACCCGATCGCGGGCGCGGTCGCGCAGGCTGTCGGGCAGCTGGATCCAGCCGCGGAATTCGGGATGAATGCCGAAAGGCCCCAGCACCTCTCGCCAGCGC....................................................................................................  >  NC_014034/2617156‑2617264
....................................................................................................CGCCAGCGCCCCCTGCACGCTGCGGTGGAACAGGCGGCGATTGGCGAGGCCGGTCAGCTCGTCGATATTGGCCGCCTGCCACAGCCGCTGCTGATCCTCGTGCATCCGG  >  NC_014034/2705013‑2705112
                                                                                                                                                                                                                 
                                  AGGCTGTCGGGCAGCTGGATCCAGCCGCGGAATTCGGGATGAATGCCGAAAGGCCCCAGCACCTCTCGCCAGCGCCCCCTGCACGCTGCGGTGGAACAGGC                                                                            >  2:3967273/1‑101 (MQ=255)
                                                                             TGCCGAAAGGCCCCAGCACCTCTCGCCAGCGCCCCCTGCACGCTGCGGTGGAACAGGCGGCGATTGGCGGGGCCGGTCAGCTCGTCGATATTGGCCGCCTG                                 <  1:3967529/101‑1 (MQ=255)
                                                                                                                                                                                                                 
GCCCATCGTCACCCGATCGCGGGCGCGGTCGCGCAGGCTGTCGGGCAGCTGGATCCAGCCGCGGAATTCGGGATGAATGCCGAAAGGCCCCAGCACCTCTCGCCAGCGC....................................................................................................  >  NC_014034/2617156‑2617264
....................................................................................................CGCCAGCGCCCCCTGCACGCTGCGGTGGAACAGGCGGCGATTGGCGAGGCCGGTCAGCTCGTCGATATTGGCCGCCTGCCACAGCCGCTGCTGATCCTCGTGCATCCGG  >  NC_014034/2705013‑2705112

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG