New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2675464 =169 (0.810)2 (0.010) 2/184 34.7 0.01 coding (709/747 nt) RCAP_rcc02493 Crp/Fnr family transcriptional regulator
?NC_014034 3074109 = 210 (0.930)coding (848/1035 nt) RCAP_rcc02877 monosacharide ABC transporter periplasmic monosacharide‑binding protein
Rejected: Position hash score below cutoff.

GCTGGAGACCGTCAGCCGGCAGATGTCCGCGCTCAAACGCGACGGGGTGATCGAGCTGGAGGGGAAACGTCACGTCACCGTGCCCGACATGGACCGGCTGCTGATCG....................................................................................................  <  NC_014034/2675570‑2675464
...................................................................................................GCTGATCGGCGATAAAGACCGACAGCTTGCCCTGCATCACCACATCCCACAGGCCGAACTGATCGACCGTGCCCGATTTCACATATTGCCGCATCGTGTTCGGCGTCG  >  NC_014034/3074109‑3074208
                                                                                                                                                                                                               
                                 CAAACGCGACGGGGTGATCGAGCTGGAGGGGAAACGTCACGTCACCGTGCCCGACATGGACCGGCTGCTGATCGGCGATAAAGACCGACAGCTTGCCCTGC                                                                           >  1:4004522/1‑101 (MQ=255)
                                                                 AACGTCACGTCACCGTGCCCGACATGGACCGGCTGCTGATCGGCGATAAAGACCGACAGCTTGCCCTGCATCACCACATCCCACAGGCCGAACTGATCGAC                                           <  2:4004266/101‑1 (MQ=255)
                                                                                                                                                                                                               
GCTGGAGACCGTCAGCCGGCAGATGTCCGCGCTCAAACGCGACGGGGTGATCGAGCTGGAGGGGAAACGTCACGTCACCGTGCCCGACATGGACCGGCTGCTGATCG....................................................................................................  <  NC_014034/2675570‑2675464
...................................................................................................GCTGATCGGCGATAAAGACCGACAGCTTGCCCTGCATCACCACATCCCACAGGCCGAACTGATCGACCGTGCCCGATTTCACATATTGCCGCATCGTGTTCGGCGTCG  >  NC_014034/3074109‑3074208

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG