New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2755180 =	210 (0.980)	2 (0.010)	2/190	35.3	0.01	intergenic (‑124/‑444)	RCAP_rcc02565/RCAP_rcc02566	hypothetical protein/reverse transcriptase catalytic domain‑containing protein
	?	NC_014034	= 3035361	213 (0.940)					coding (377/630 nt)	torD	chaperone protein TorD
Rejected: Position hash score below cutoff.

AAGTGGCAGGGTGGTGCCAATATCGAGGCTGTCCTGTGATAGGAGCGCCCGACCTCGGGCCACGCCACGGCCCGGGGGCAGGACCGGAAACCTTGAGCGGCCTGC....................................................................................................  <  NC_014034/2755284‑2755180 ....................................................................................................CCTGCGTCTGGCCGAGGGCTGCTGCGAGGCGCCCGACCATCTCTCGGTCGAGCTGATGCTGCTCGCCCATCTTGAAACCCATGCCGATCCGCGCGCCGGGTCGCT  <  NC_014034/3035361‑3035262                                                                                                                                                                                                                                                 TGTGATAGGAGCGCCCGACCTCGGGCCACGCCACGGCCCGGGGGCAGGACCGGAAACCTTGAGCGGCCTGCGTCTGGCCGAGGGCTGCTGCGAGGCGCCCG                                                                        >  2:532069/1‑101 (MQ=255)                                               GCCCGACCTCGGGCCACGCCACGGCCCGGGGGCAGGACCGGAAACCTTGAGCGGCCTGCGTCTGGCCGAGGGCTGCTGCGAGGCGCCCGACCATCTCTCGG                                                            <  1:532121/101‑1 (MQ=255)                                                                                                                                                                                                               AAGTGGCAGGGTGGTGCCAATATCGAGGCTGTCCTGTGATAGGAGCGCCCGACCTCGGGCCACGCCACGGCCCGGGGGCAGGACCGGAAACCTTGAGCGGCCTGC....................................................................................................  <  NC_014034/2755284‑2755180 ....................................................................................................CCTGCGTCTGGCCGAGGGCTGCTGCGAGGCGCCCGACCATCTCTCGGTCGAGCTGATGCTGCTCGCCCATCTTGAAACCCATGCCGATCCGCGCGCCGGGTCGCT  <  NC_014034/3035361‑3035262 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG