New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2814970 =176 (0.820)2 (0.010) 2/190 35.3 0.01 coding (423/2292 nt) RCAP_rcc02623 hypothetical protein
?NC_014034 2815841 = 167 (0.740)coding (1396/1605 nt) lysS lysyl‑tRNA synthetase
Rejected: Position hash score below cutoff.

GCGCATGTGAACGGGCTGGTCGAAGTGGCCAGCCCGGTCACGCTGACCACCTATGGCAAGGTGGTGACGGTGCAGGCGATCGTCGGCTCGGGCACGCGCGCGGGT....................................................................................................  <  NC_014034/2815074‑2814970
....................................................................................................CGGGTCCTCGAATTGCAGATGCAGGTCGGTCGCGGGCAGCGCCTTCAGCCGTGCCAACAGATCCTCCATCGCCGCGCGTTCCTTGTCGGAGGGCAGCCGGAAGGT  >  NC_014034/2815841‑2815940
                                                                                                                                                                                                             
                              AGCCCGGTCACGCTGACCACCTATGGCAAGGTGGTGACGGTGCAGGCGATCGTCGGCTCGGGCACGCGCGCGGGTCCTCGAATTGCAGATGCAGGTCGGTC                                                                            >  1:3398312/1‑101 (MQ=255)
                                                             TGGTGACGGTGCAGGCGATCGTCGGCTCGGGCACGCGCGCGGGTCCTCGAATTGCAGATGCAGGTCGGTCGCGGGCAGCGCCTTCAGCCGTGCCAACAGAT                                             <  2:3398075/101‑1 (MQ=255)
                                                                                                                                                                                                             
GCGCATGTGAACGGGCTGGTCGAAGTGGCCAGCCCGGTCACGCTGACCACCTATGGCAAGGTGGTGACGGTGCAGGCGATCGTCGGCTCGGGCACGCGCGCGGGT....................................................................................................  <  NC_014034/2815074‑2814970
....................................................................................................CGGGTCCTCGAATTGCAGATGCAGGTCGGTCGCGGGCAGCGCCTTCAGCCGTGCCAACAGATCCTCCATCGCCGCGCGTTCCTTGTCGGAGGGCAGCCGGAAGGT  >  NC_014034/2815841‑2815940

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG