New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2871456 =213 (1.020)2 (0.010) 2/184 34.7 0.01 coding (1287/1407 nt) mdtK multidrug resistance protein MdtK
?NC_014034 = 3044477 219 (0.970)coding (455/690 nt) RCAP_rcc02854 ABC transporter ATP‑binding protein
Rejected: Position hash score below cutoff.

GTGCATGATACCCGGGTGCCGATGGTGATCGCCACGATCAGCTATTGGCTGGTCGGCGTGCCCGCCAGCTACATCCTCGCCTTCCGCTTCGATCTGGGCGGGGTGGGG....................................................................................................  <  NC_014034/2871563‑2871456
....................................................................................................GGGTGGGGACATCAAGCGCGGAAAAGGGTTCATCGAGCGCCACAAGCGCGGCATCATCGGCCAGCACCCGGGCCAGCGCAAGGCGCTGCCGCTCGCCGCCCGACAGCG  <  NC_014034/3044477‑3044378
                                                                                                                                                                                                                
                                          TATTGGCTGGTCGGCGTGCCCGCCAGCTACAACCTCGCCTTCCGCTTCGATCTGGGCGGGGTGGGGACATCAAGCGCGGAAAAGGGTTCATCGAGCGCCAC                                                                   >  1:3957365/1‑101 (MQ=255)
                                           ATTGGCTGGTCGGCGTGCCCGCCAGCTACATCCTCGCCTTCCGCTTCGATCTGGGCGGGGTGGGGACATCAAGCGCGGAAAAGGGTTCATCGAGCGCCACA                                                                  <  2:3957109/101‑1 (MQ=255)
                                                                                                                                                                                                                
GTGCATGATACCCGGGTGCCGATGGTGATCGCCACGATCAGCTATTGGCTGGTCGGCGTGCCCGCCAGCTACATCCTCGCCTTCCGCTTCGATCTGGGCGGGGTGGGG....................................................................................................  <  NC_014034/2871563‑2871456
....................................................................................................GGGTGGGGACATCAAGCGCGGAAAAGGGTTCATCGAGCGCCACAAGCGCGGCATCATCGGCCAGCACCCGGGCCAGCGCAAGGCGCTGCCGCTCGCCGCCCGACAGCG  <  NC_014034/3044477‑3044378

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG