New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2899214 =237 (1.150)2 (0.010) 2/182 34.5 0.01 coding (1511/1605 nt) RCAP_rcc02710 hypothetical protein
?NC_014034 3678204 = 216 (0.960)coding (423/606 nt) pncA pyrazinamidase/nicotinamidase
Rejected: Position hash score below cutoff.

CTGCGGGTGATCGACCGCGTGCCCTATGCCGAACAGGAGGATCTGCAGATCACCCATGCCGCGACGCCGCCCGCGACCACGACCGATTACGACGACATGCGCGGCGT....................................................................................................  <  NC_014034/2899320‑2899214
..................................................................................................GCGCGGCGTCATGCAGGTGACCCTTGTCGGGCTGGCGCTGGATTTCTGCGTGGGCTGGTCGGCGATCGATGCGGCGAAGCTTGGCTTCACCACCCGCGTCCTGACGGGC  >  NC_014034/3678204‑3678303
                                                                                                                                                                                                               
                                                               ACGCCGCCCGCGACCACGACCGATTACGACGACATGCGCGGCGTCATGCAGGTGACCCTTGTCGGGCTGGCGCTGGATTTCTGCGTGGGCTGGTCGGCGAT                                             >  2:1297019/1‑101 (MQ=255)
                                                                     CCCGCGACCACGACCGATTACGACGACATGCGCGGCGTCATGCAGGTGACCCTTGTCGGGCTGGCGCTGGATTTCTGCGTGGGCTGGTCGGCGATCGATGC                                       <  1:1297112/101‑1 (MQ=255)
                                                                                                                                                                                                               
CTGCGGGTGATCGACCGCGTGCCCTATGCCGAACAGGAGGATCTGCAGATCACCCATGCCGCGACGCCGCCCGCGACCACGACCGATTACGACGACATGCGCGGCGT....................................................................................................  <  NC_014034/2899320‑2899214
..................................................................................................GCGCGGCGTCATGCAGGTGACCCTTGTCGGGCTGGCGCTGGATTTCTGCGTGGGCTGGTCGGCGATCGATGCGGCGAAGCTTGGCTTCACCACCCGCGTCCTGACGGGC  >  NC_014034/3678204‑3678303

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG