New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3105491 =	185 (0.890)	2 (0.010)	2/184	34.7	0.01	coding (790/3117 nt)	RCAP_rcc02907	hypothetical protein
	?	NC_014034	= 3722622	225 (1.000)					coding (107/426 nt)	flgA	flagella basal body P‑ring formation protein FlgA
Rejected: Position hash score below cutoff.

CTGTCACGCTGTTTCCGACCGCCGTGGTGATGTCGGAGGAGGTCTCGGGCCAGGAGCTCGCAGGGTCCAGGGCCGGGACCTATGTCCGGTCCGGCACCACGATCACCG....................................................................................................  <  NC_014034/3105598‑3105491 ....................................................................................................GATCACCGAATCGGATCTGGCGCTCTCCGAGGAAGACGTGCCCGGGGCGCTGACCGATCCGCTGTCGGCGGTCGGCCTCGAGACCCGGACCGCGATCTATCCGCAACA  <  NC_014034/3722622‑3722523                                                                                                                                                                                                                                                                                   TCCAGGGCCGGGACCTATGTCCGGTCCGGCACCACGATCACCGAATCGGATCTGGCGCTCTCCGAGGAAGACGTGCCCGGGGCGCTGACCGATCCGCTGTC                                            >  2:842383/1‑101 (MQ=255)                                                                               CCTATGTCCGGTCCGGCACCACGATCACCGAATCGGATCTGGCGCTCTCCGAGGAAGACGTGCCCGGGGCGCTGACCGATCCGCTGTCGGCGGTCGGCCTC                               <  1:842465/101‑1 (MQ=255)                                                                                                                                                                                                                  CTGTCACGCTGTTTCCGACCGCCGTGGTGATGTCGGAGGAGGTCTCGGGCCAGGAGCTCGCAGGGTCCAGGGCCGGGACCTATGTCCGGTCCGGCACCACGATCACCG....................................................................................................  <  NC_014034/3105598‑3105491 ....................................................................................................GATCACCGAATCGGATCTGGCGCTCTCCGAGGAAGACGTGCCCGGGGCGCTGACCGATCCGCTGTCGGCGGTCGGCCTCGAGACCCGGACCGCGATCTATCCGCAACA  <  NC_014034/3722622‑3722523 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG