New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 315185209 (0.990)3 (0.010) 3/186 33.7 0.01 coding (619/744 nt) RCAP_rcc00277 hypothetical protein
?NC_014034 2786520 = 219 (0.970)intergenic (‑177/+54) RCAP_rcc02595/RCAP_rcc02596 XRE family transcriptional regulator/lipoprotein
Rejected: Position hash score below cutoff.

CTATATCCGCAACGGCGTGGGGGTTTCGGCCGACGGGCTGACCGCCTGGTTCGTGATTTCCGACCGGGCCGTCACCTTCCACCGCTTCGCCCGCTTCTTCCGCGACA....................................................................................................  >  NC_014034/315079‑315185
....................................................................................................CGCGACACCCGGGGCCACGCGATACCGGGGCGCCAGGGCGCGGCAGGGCCCCGCCCAGCGATCAGCAGGGGTTTTGCACCGTCACGCTCGAGAGCGTCGACAGGTCG  >  NC_014034/2786520‑2786619
                                                                                                                                                                                                               
                                                                    CCGTCACCTTCCACCGCTTCGCCCGCTTCTTCCGCGACACCCGGGGCCACGCGATACCGGGGCGCCAGGGCGCGGCAGGGCCCCGCCCAGCGATCAGCAGG                                        >  1:3727078/1‑101 (MQ=255)
                                                                    CCGTCACCTTCCACCGCTTCGCCCGCTTCTTCCGCGACACCCGGGGCCACGCGATACCGGGGCGCCAGGGCGCGGCAGGGCCCCGCCCAGCGATCAGCAGG                                        <  2:3726825/101‑1 (MQ=255)
                                                                                                   CCGCGACACCCGGGGCCACGCGATACCGGGGCGCCAGGGCGCGGCAGGGCCCCGCCCAGCGATCAGCAGGGGTTTTGCACCGTCACGCTCGAGAGCGTCGA         <  2:975978/101‑1 (MQ=255)
                                                                                                                                                                                                               
CTATATCCGCAACGGCGTGGGGGTTTCGGCCGACGGGCTGACCGCCTGGTTCGTGATTTCCGACCGGGCCGTCACCTTCCACCGCTTCGCCCGCTTCTTCCGCGACA....................................................................................................  >  NC_014034/315079‑315185
....................................................................................................CGCGACACCCGGGGCCACGCGATACCGGGGCGCCAGGGCGCGGCAGGGCCCCGCCCAGCGATCAGCAGGGGTTTTGCACCGTCACGCTCGAGAGCGTCGACAGGTCG  >  NC_014034/2786520‑2786619

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG