New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3308408155 (0.770)2 (0.010) 2/178 34.1 0.01 coding (299/321 nt) RCAP_rcc03112 hypothetical protein
?NC_014034 3316522 = 218 (0.960)coding (867/1656 nt) RCAP_rcc03120 ABC transporter ATP‑binding protein
Rejected: Position hash score below cutoff.

CGGGATCGACCCGAACGAGCGCGTGGTCAAGGGGCTGATGGAATTCGTGTCGAAAGGGGTGCGGACCTCGGTGGCACTGTCGCGCGAAGAAAGCGAACGGCGGATCGCGGC....................................................................................................  >  NC_014034/3308298‑3308408
....................................................................................................CGGATCGCGGCTTACGACAAGATGGCCGAGGAAGGCGTCAAGGAACGGGTCGGCAAGGCGCAGATCATCATTCCGAACGGGCCGCGTCTCGGCGGCAAGGTGATCGAGGTC  >  NC_014034/3316522‑3316621
                                                                                                                                                                                                                   
                                   TGATGGAATTCGTGTCGAAAGGGGTGCGGACCTCGGTGGCACTGTCGCGCGAAGAAAGCGAACGGCGGATCGCGGCTTACGACAAGATGGCCGAGGAAGGC                                                                             >  1:70954/1‑101 (MQ=255)
                                   TGATGGAATTCGTGTCGAAAGGGGTGCGGACCTCGGTGGCACTGTCGCGCGAAGAAAGCGAACGGCGGATCGCGGCTTACGACAAGATGGCCGAGGAAGGC                                                                             <  2:70941/101‑1 (MQ=255)
                                                                                                                                                                                                                   
CGGGATCGACCCGAACGAGCGCGTGGTCAAGGGGCTGATGGAATTCGTGTCGAAAGGGGTGCGGACCTCGGTGGCACTGTCGCGCGAAGAAAGCGAACGGCGGATCGCGGC....................................................................................................  >  NC_014034/3308298‑3308408
....................................................................................................CGGATCGCGGCTTACGACAAGATGGCCGAGGAAGGCGTCAAGGAACGGGTCGGCAAGGCGCAGATCATCATTCCGAACGGGCCGCGTCTCGGCGGCAAGGTGATCGAGGTC  >  NC_014034/3316522‑3316621

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG