New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 338512	215 (1.070)	2 (0.010)	2/178	34.1	0.01	coding (1347/2127 nt)	fusA1	translation elongation factor G
	?	NC_014034	= 2268322	205 (0.910)					intergenic (‑193/+355)	RCAP_rcc02108/RCAP_rcc02109	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

GTCGTTCTGGAAACCATGACCTTCCCGGTCCCGGTGATCGAGATCGCGGTGGAACCGAAGACCAAGGCCGACCAGGAAAAGATGGGCATCGCGCTGGCCCGTCTGGCGGCC....................................................................................................  >  NC_014034/338402‑338512 ....................................................................................................GTCTGGCGGCCTAAGGTTAGAACTGAAGGCTATACTTCCGTCTCGTCATTCTGTCTCTCCAGTTCCTTGATTACGGACCTATATCCGTGTCGACAGAACCGGCAGCAGGCC  <  NC_014034/2268322‑2268223                                                                                                                                                                                                                                                     GGTGATCGAGATCGCGGTGGAACCGAAGACCAAGGCCGACCAGGAAAAGATGGGCATCGCGCTGGCCCGTCTGGCGGCCTAAGGTTAGAACTGAAGGCTAT                                                                                >  1:699775/1‑101 (MQ=255)                                           ATCGCGGTGGAACCGAAGACCAAGGCCGACCAGGAAAAGATGGGCATCGCGCTGGCCCGTCTGGCGGCCTAAGGTTAGAACTGAAGGCTATACTTCCGTCT                                                                      <  2:699695/101‑1 (MQ=255)                                                                                                                                                                                                                     GTCGTTCTGGAAACCATGACCTTCCCGGTCCCGGTGATCGAGATCGCGGTGGAACCGAAGACCAAGGCCGACCAGGAAAAGATGGGCATCGCGCTGGCCCGTCTGGCGGCC....................................................................................................  >  NC_014034/338402‑338512 ....................................................................................................GTCTGGCGGCCTAAGGTTAGAACTGAAGGCTATACTTCCGTCTCGTCATTCTGTCTCTCCAGTTCCTTGATTACGGACCTATATCCGTGTCGACAGAACCGGCAGCAGGCC  <  NC_014034/2268322‑2268223 Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG