New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3461383	111 (0.490)	19 (0.080)	3/200	35.0	0.15	intergenic (‑93/+37)	RCAP_rcc03260/RCAP_rcc03261	NAD‑dependent epimerase/dehydratase/TOBE domain‑containing protein
	?	NC_014034	3461387 =	109 (0.480)					intergenic (‑97/+33)	RCAP_rcc03260/RCAP_rcc03261	NAD‑dependent epimerase/dehydratase/TOBE domain‑containing protein
Rejected: Position hash score below cutoff.

TTCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGG.GCAGCCG....................................................................................................  >  NC_014034/3461286‑3461383 ...................................................................................................CCACCGGGCCGC.CCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCAG  >  NC_014034/3461387‑3461485                                                                                                                                                                                                         TTCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACC                                                                                                    <  2:700507/101‑1 (MQ=255) TTCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACC                                                                                                    >  1:3579669/1‑101 (MQ=255)  TCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCc                                                                                                   >  2:663370/1‑100 (MQ=255)  TCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCc                                                                                                   <  1:2965627/101‑2 (MQ=255)  TCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCc                                                                                                   >  2:1778441/1‑100 (MQ=255)  TCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCc                                                                                                   >  1:3817244/1‑100 (MQ=255)  TCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCc                                                                                                   <  1:4000646/101‑2 (MQ=255)   CATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCcg                                                                                                  <  2:2633054/101‑3 (MQ=255)   CATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCcg                                                                                                  <  2:1377791/101‑3 (MQ=255)   CATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCcg                                                                                                  <  1:3106293/101‑3 (MQ=255)   CATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGGCGCAGCCACCcg                                                                                                  >  1:3003380/1‑99 (MQ=255)                                                                                                 caGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTC    <  2:4204684/99‑1 (MQ=255)                                                                                                 caGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTC    <  2:66609/99‑1 (MQ=255)                                                                                                  aGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCg   >  1:2125543/2‑100 (MQ=255)                                                                                                  aGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCA   <  1:3434919/100‑1 (MQ=255)                                                                                                  aGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCA   >  2:2821300/2‑101 (MQ=255)                                                                                                  aGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCA   >  2:4320305/2‑101 (MQ=255)                                                                                                  aGCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCA   <  1:2255717/100‑1 (MQ=255)                                                                                                   GCCACCCGGCCGCGCCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCAG  <  2:3514315/101‑1 (MQ=255)                                                                                                                                                                                                         TTCATCGCAAGGCCCCCTTTTCGCACCCGCAGCTTAGCAGGATGCACGGGCGCGGCCAGACGCAGTTTGGCGCAGGGCCAAAGGAAGGGGG.GCAGCCG....................................................................................................  >  NC_014034/3461286‑3461383 ...................................................................................................CCACCGGGCCGC.CCCCCAACCCCGGTCGTTCGATCAGTTCTTGCCGACGATGACGTCAGAGGCCTTGATGATCGCGCAGGCCTCGTCGCCGACCTTCAG  >  NC_014034/3461387‑3461485 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG