New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3462755 =	246 (1.170)	2 (0.010)	2/186	34.9	0.01	coding (80/213 nt)	RCAP_rcc03263	NifT/FixU family protein
	?	NC_014034	3689784 =	221 (0.980)					coding (1212/1656 nt)	fliF	flagellar M‑ring protein FliF
Rejected: Position hash score below cutoff.

TGCGCAAACTGCAAAGGACCTCTCCCGATGAAAGTGATGATCCGTGAAACCGCCAAGGGGATCGAGGCCTATGTGCCGAAGAAGGACCTTGAGGAAATGGTGGTCGC....................................................................................................  <  NC_014034/3462861‑3462755 ....................................................................................................TGGTCGCCTCGGTGCCGGTTTCGGCGAGCGGCTCGAAGGCCATCGAGCGGATGGTGATGACGTCGCCGCGCTTTTCGTCGAAGCCCACGGCCGAGGCCACCAGCTCC  >  NC_014034/3689784‑3689883                                                                                                                                                                                                                                                                                            tCGAAGAAGGACCTTGAGGAAATGGTGGTCGCCTCGGTGCCGGTTTCGGCGAGCGGCTCGAAGGCCATCGAGCGGATGGTGATGACGTCGCCGCGCTTTTC                                 <  1:4081148/100‑1 (MQ=255)                                                                             CGAAGAAGGACCTTGAGGAAATGGTGGTCGCCTCGGTGCCGGTTTCGGCGAGCGGCTCGAAGGCCATCGAGCGGATGGTGATGGCGTCGCCGCGCTTTTCc                                >  2:4080888/1‑100 (MQ=255)                                                                                                                                                                                                                 TGCGCAAACTGCAAAGGACCTCTCCCGATGAAAGTGATGATCCGTGAAACCGCCAAGGGGATCGAGGCCTATGTGCCGAAGAAGGACCTTGAGGAAATGGTGGTCGC....................................................................................................  <  NC_014034/3462861‑3462755 ....................................................................................................TGGTCGCCTCGGTGCCGGTTTCGGCGAGCGGCTCGAAGGCCATCGAGCGGATGGTGATGACGTCGCCGCGCTTTTCGTCGAAGCCCACGGCCGAGGCCACCAGCTCC  >  NC_014034/3689784‑3689883 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG