New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3471067	174 (0.840)	2 (0.010)	2/184	34.7	0.01	intergenic (‑67/+100)	RCAP_rcc03272/RCAP_rcc03273	HesB/YadR/YfhF family protein/hypothetical protein
	?	NC_014034	= 3619753	182 (0.800)					coding (1631/3459 nt)	smc	chromosome partition protein Smc
Rejected: Position hash score below cutoff.

CTTGATCGCTTCCTGGGCGGGTTGGGTGATCTCGATCATGACGCTCTCCCCTGTGATGCGTTCATCAGGGATGCAGCAAGAAGCGTGCCAACCATGCGGGCGGGGG....................................................................................................  >  NC_014034/3470962‑3471067 ..................................................................................................GGCGGGGGCCCGGTCCGGCTGGGGCGTGCTGCCCGATTACGACGCGGTGCAGCCCTTGCCCGCGGGCGTCGAGCCGCTGTCGGCCCATGTCGAGGTGCCCGCCGTGCT  <  NC_014034/3619753‑3619654                                                                                                                                                                                                                                                                 CCTGTGATGCGTTCATCAGGGATGCAGCAAGAAGCGTGCCAACCATGCGGGCGGGGGCCCGGTCCGGCTGGGGCGTGCTGCCCGATTACGACGCTGTGCAG                                                          >  1:387367/1‑101 (MQ=255)                                                       GATGCGTTCATCAGGGATGCAGCAAGAAGCGTGCCAACCATGCGGGCGGGGGCCCGGTCCGGCTGGGGCGTGCTGCCCGATTACGACGCTGTGCAGCCCTT                                                     <  2:387328/101‑1 (MQ=255)                                                                                                                                                                                                                CTTGATCGCTTCCTGGGCGGGTTGGGTGATCTCGATCATGACGCTCTCCCCTGTGATGCGTTCATCAGGGATGCAGCAAGAAGCGTGCCAACCATGCGGGCGGGGG....................................................................................................  >  NC_014034/3470962‑3471067 ..................................................................................................GGCGGGGGCCCGGTCCGGCTGGGGCGTGCTGCCCGATTACGACGCGGTGCAGCCCTTGCCCGCGGGCGTCGAGCCGCTGTCGGCCCATGTCGAGGTGCCCGCCGTGCT  <  NC_014034/3619753‑3619654 Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG