New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 3502819246 (1.170)3 (0.010) 2/186 34.9 0.01 coding (1617/1644 nt) RCAP_rcc03306 acyl‑CoA dehydrogenase, medium‑chain specific
?NC_014034 3663508 = 198 (0.880)coding (1938/2064 nt) recQ ATP‑dependent DNA helicase RecQ
Rejected: Position hash score below cutoff.

AGATCCACGGCGGCAACGGCTTTGCGCTCGAATATGCGATCTCGCGCATTCTGTGTGACGCCCGGATCCTCAACATCTTCGAGGGCGCGGCGGAAATTCAGGCGCAG....................................................................................................  >  NC_014034/3502713‑3502819
....................................................................................................GGCGCAGCATCGTCGCGGTGCAGGACAAAAACCGCTCATGCCCGTCTTCGCCGCGCGCCAGCGCCCGCTGCGCGCCGTCGAGCGCATCATAAAGGCTGGCCGCCGCC  >  NC_014034/3663508‑3663607
                                                                                                                                                                                                               
                            gatcTATGCGATCTCGCGCATTCTGTGTGACGCCCGGATCCTCAACATCTTCGAGGGCGCGGCGGAAATTCAGGCGCAGCATCGTCGCGGTGCAGGACAAA                                                                                <  2:4170898/97‑1 (MQ=255)
                                 ATGCGATCTCGCGCATTCTGTGTGACGCCCGGATCCTCAACATCTTCGAGGGCGCGGCGGAAATTCAGGCGCAGCATCGTCGCGGTGCAGGACAAAAgatc                                                                           >  1:4171159/1‑97 (MQ=255)
                                                                                                aTCAGGCGCAGCATCGTCGCGGTGCAGGACAAAAACCGCTCATGCCCGTCTTCGCCGCGCGCCAGCGCCCGCTGCGCGCCGTCGAGCGCATCATAAAGGCT            >  2:3770088/2‑101 (MQ=255)
                                                                                                                                                                                                               
AGATCCACGGCGGCAACGGCTTTGCGCTCGAATATGCGATCTCGCGCATTCTGTGTGACGCCCGGATCCTCAACATCTTCGAGGGCGCGGCGGAAATTCAGGCGCAG....................................................................................................  >  NC_014034/3502713‑3502819
....................................................................................................GGCGCAGCATCGTCGCGGTGCAGGACAAAAACCGCTCATGCCCGTCTTCGCCGCGCGCCAGCGCCCGCTGCGCGCCGTCGAGCGCATCATAAAGGCTGGCCGCCGCC  >  NC_014034/3663508‑3663607

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG