New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 3607 =196 (0.910)2 (0.010) 2/190 35.3 0.01 coding (615/1059 nt) recF DNA replication and repair protein RecF
?NC_014034 2704236 = 207 (0.920)coding (1635/2049 nt) RCAP_rcc02519 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

TCCAGCGTCCGCCCGGCCGCCATGTCGCGGCGCCGCCCCTCGGCCAGCGCCGTGGCCAGATCCTCGGGCCCCTCGGCCGTCAGACCCAGATCGGCCGCCGGAAAG....................................................................................................  <  NC_014034/3711‑3607
....................................................................................................GAAAGCCCGCGCGCCGCGATCAGCGCCAGGATCTGCTCGGCGAAATCCATCCCCCGCAGCGAGGCTTCGGAGAAATTGACCCCCACCCGCATCAGCCGCGCCGCA  >  NC_014034/2704236‑2704335
                                                                                                                                                                                                             
                                                                 GGGCCCCTCGGCCGTCAGACCCAGATCGGCCGCCGGAAAGCCCGCGCGCCGCGATCAGCGCCAGGATCTGCTCGGCGAAATCCATCCCCCGCAGCGAGGCT                                         >  1:1317932/1‑101 (MQ=255)
                                                                      CCTCGGCCGTCAGACCCAGATCGGCCGCCGGAAAGCCCGCGCGCCGCGATCAGCGCCAGGATCTGCTCGGCGAAATCCATCCCCCGCAGCGAGGCTTCGGA                                    <  2:1317835/101‑1 (MQ=255)
                                                                                                                                                                                                             
TCCAGCGTCCGCCCGGCCGCCATGTCGCGGCGCCGCCCCTCGGCCAGCGCCGTGGCCAGATCCTCGGGCCCCTCGGCCGTCAGACCCAGATCGGCCGCCGGAAAG....................................................................................................  <  NC_014034/3711‑3607
....................................................................................................GAAAGCCCGCGCGCCGCGATCAGCGCCAGGATCTGCTCGGCGAAATCCATCCCCCGCAGCGAGGCTTCGGAGAAATTGACCCCCACCCGCATCAGCCGCGCCGCA  >  NC_014034/2704236‑2704335

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG