New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 376355216 (1.070)2 (0.010) 2/178 34.1 0.01 coding (220/270 nt) RCAP_rcc00348 hypothetical protein
?NC_014034 = 2992043 198 (0.880)coding (145/1413 nt) RCAP_rcc02800 hypothetical protein
Rejected: Position hash score below cutoff.

TGAATTCGGTGGAGGAAGGCGCCCCCGCCAGCAGCGGCGGCAGGCCGGTGTCATCCTCGTCAAGCATGGTCGTGATCCTTGTGCCGCGTCGCGTCAAAGGCCGGATCGGC....................................................................................................  >  NC_014034/376246‑376355
...................................................................................................GCCGGATCGGCATCACCTTTGCGGTCTATGGCGAGGGGGGCGACCCGGACCGGCTGATCCCCTTCGACATGTTTCCGCGCGTCTTCACGCAAGGGGAATGGCGCAAGCTCG  <  NC_014034/2992043‑2991944
                                                                                                                                                                                                                  
                                     CGGCAGGCCGGTGTCATCCTCGTCAAGCATGGTCGTGATCCTTGTGCCGCGTCGCGTCAAAGGCCGGATCGGCATCACCTTTGCGGTCTATGGCGAGGGGG                                                                          >  1:1400047/1‑101 (MQ=255)
                                                                          ATCCTTGTGCCGCGTCGCGTCAAAGGCCGGATCGGCATCACCTTTGCGGTCTATGGCGAGGGGGGCGACCCGGACCGGCTGATCCCCTTCGACATGTTTCC                                     <  2:1399940/101‑1 (MQ=255)
                                                                                                                                                                                                                  
TGAATTCGGTGGAGGAAGGCGCCCCCGCCAGCAGCGGCGGCAGGCCGGTGTCATCCTCGTCAAGCATGGTCGTGATCCTTGTGCCGCGTCGCGTCAAAGGCCGGATCGGC....................................................................................................  >  NC_014034/376246‑376355
...................................................................................................GCCGGATCGGCATCACCTTTGCGGTCTATGGCGAGGGGGGCGACCCGGACCGGCTGATCCCCTTCGACATGTTTCCGCGCGTCTTCACGCAAGGGGAATGGCGCAAGCTCG  <  NC_014034/2992043‑2991944

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG