New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	390805 =	46 (0.270)	32 (0.190)	20/150	17.1	0.39	intergenic (‑121/+168)	mipZ/rpmE	chromosome partitioning protein MipZ/50S ribosomal protein L31
	?	NC_014034	1732895 =	55 (0.240)					intergenic (‑319/‑84)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA....................................................................................................  <  NC_014034/390925‑390805 .................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGCT  >  NC_014034/1732895‑1732994                                                                                                                                                                                                                                                                                                     ggGCGGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGC                                                     <  2:2950318/99‑1 (MQ=17)                                                                         gGGGGGGTGAAC.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCG                                                  <  1:649247/100‑1 (MQ=9)                                                                         gGGGGGGTGAAC.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCG                                                  <  1:1779096/100‑1 (MQ=9)                                                                          GGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGc                                                 >  2:3057275/1‑100 (MQ=17)                                                                          GGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGG                                                 >  2:132787/1‑101 (MQ=17)                                                                          GGGGGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGG                                                 >  1:2504441/1‑101 (MQ=17)                                                                           GGGGGTGAAGCCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGG                                                 <  2:431740/101‑1 (MQ=9)                                                                             GGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCCGCcc                                              >  2:1727054/1‑99 (MQ=12)                                                                             GGGTGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCCCGCGTCGCTTTCCCTTTCGGCCCGGCGC                                              >  1:2587551/1‑101 (MQ=12)                                                                             GGGTGAAG.CCCCCCGCGGGTCGCCCCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGC                                              >  1:2246995/1‑101 (MQ=12)                                                                              gggcccccCCCCCGGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGC                                              <  2:805085/93‑1 (MQ=0)                                                                              gggaAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                                             <  2:376172/97‑1 (MQ=11)                                                                              gggGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                                             <  2:4147154/98‑1 (MQ=14)                                                                                 gcaccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGC                                           <  2:4149364/96‑1 (MQ=1)                                                                                 GAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                                          <  2:2973217/101‑1 (MQ=31)                                                                                 GAAG.CCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCCGCGCTGCc                                          >  2:4359633/1‑100 (MQ=9)                                                                                  cagcCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                                          <  1:2640157/97‑1 (MQ=1)                                                                                   agcCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTA                                         <  1:1344628/98‑1 (MQ=1)                                                                                    G.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAA                                       >  2:2410440/1‑101 (MQ=1)                                                                                    G.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCCGCCCCGCGCCGCTAAA                                       >  2:862915/1‑101 (MQ=0)                                                                                     cCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAA                                       <  1:4344341/100‑1 (MQ=1)                                                                                      CCCCCGGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                      <  1:605999/101‑1 (MQ=1)                                                                                      CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                      <  2:3192987/101‑1 (MQ=1)                                                                                      CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                                      <  1:3007977/101‑1 (MQ=1)                                                                                       CCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCCGCTAAACG                                     >  1:2941094/1‑101 (MQ=1)                                                                                        CCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGC                                    <  2:198001/101‑1 (MQ=1)                                                                                             CGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCC                               >  2:2646967/1‑101 (MQ=1)                                                                                              GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA                              >  1:1726404/1‑101 (MQ=1)                                                                                               GGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAA                             <  1:2420127/101‑1 (MQ=1)                                                                                                GTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAA                            <  1:4210321/101‑1 (MQ=1)                                                                                                 TCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAG                           <  1:3126213/101‑1 (MQ=1)                                                                                                 TCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAG                           <  1:1409582/101‑1 (MQ=1)                                                                                                                                                                                                                                TTGCGCGGCGCCACCCGACCGCCAGAGGGGGCTCCGCCCCCCTTTTCCTTGGCAAAATACGCTGGGGGGGTGCGGGGGGCGAAG.CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAA....................................................................................................  <  NC_014034/390925‑390805 .................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCGATGACCCAGTTCAGCT  >  NC_014034/1732895‑1732994 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG