New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 408497	90 (0.430)	28 (0.140)	12/180	25.3	0.19	intergenic (+115/+33)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	2640261 =	142 (0.630)					intergenic (‑237/+39)	thrS/RCAP_rcc02462	threonyl‑tRNA synthetase/hypothetical protein
Rejected: Position hash score below cutoff.

CTCTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGCAAAGACGGGGG....................................................................................................  >  NC_014034/408394‑408497 ................................................................................................GACGGGGGGCAGAGCCCCCCTCCCGGGTCTTTCTCAAGCGTTCCGGCTCAGAACCGGAAGCCCGCGCGCACCTGCACGGTGTTGAAGTTGGTGTCGACGCTGCGCGCA  >  NC_014034/2640261‑2640360                                                                                                                                                                                                                 TGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGGCCTTCATCTTGCCGCAAATATCCCGGGGGGGGGCTTGCTGAAAGC.AAGACGGGGGG                                                                                                     >  2:1257335/1‑101 (MQ=0)     GCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGC                                                                                                    >  2:2845506/1‑101 (MQ=1)      CCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCA                                                                                                   >  1:1204423/1‑101 (MQ=1)      CCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCA                                                                                                   <  1:1348590/101‑1 (MQ=1)       CCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAG                                                                                                  <  2:2684992/101‑1 (MQ=1)       CCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAG                                                                                                  >  1:4414609/1‑101 (MQ=1)        CCCAGACCCCGGGGATATTTGGGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGA                                                                                                 <  1:4435016/101‑1 (MQ=0)         CCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAG                                                                                                <  2:4234465/101‑1 (MQ=1)         CCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAG                                                                                                >  2:1700875/1‑101 (MQ=1)          CAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGC                                                                                               <  2:4019496/101‑1 (MQ=1)          CAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGC                                                                                               <  2:2490147/101‑1 (MQ=1)           agcCCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCC                                                                                              <  2:4067876/98‑1 (MQ=0)            GACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCC                                                                                             <  2:2663694/101‑1 (MQ=1)             gCCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            <  2:1468045/100‑1 (MQ=0)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGCGTCCC                                                                                            >  2:1424686/1‑101 (MQ=0)             ACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCC                                                                                            >  2:192571/1‑101 (MQ=1)                CCCGGGATATTTGCGGCAAGATGAAGCCGATGTGCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCg                                                                                         >  2:1961223/1‑100 (MQ=2)                CCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCg                                                                                         <  1:2659586/101‑2 (MQ=11)                 CCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgc                                                                                        >  2:4154077/1‑99 (MQ=14)                  CGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgca                                                                                       >  2:927616/1‑98 (MQ=17)                  CGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgca                                                                                       >  1:1760124/1‑98 (MQ=17)                  CGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgca                                                                                       >  1:3053735/1‑98 (MQ=17)                  CGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgca                                                                                       >  1:4354201/1‑98 (MQ=17)                   GGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcac                                                                                      >  2:2181592/1‑97 (MQ=18)                   GGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcac                                                                                      <  2:2122591/101‑5 (MQ=18)                    GGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcaca                                                                                     >  1:2364277/1‑96 (MQ=21)                    GGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcaca                                                                                     <  2:1896825/101‑6 (MQ=21)                    GGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcaca                                                                                     <  1:3150799/101‑6 (MQ=21)                     GATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcacag                                                                                    <  1:2379200/101‑7 (MQ=25)                     GATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGC.AAGACGGGGGGCAGAGCCCCCCgcacag                                                                                    >  1:2749030/1‑95 (MQ=25)                                                                                                                                                                                                              CTCTGCCCCCAGACCCCCGGGATATTTGCGGCAAGATGAAGCCGATGTCCTTCATCTTGCCGCAAATATCCCGGGGGGAGGCTTGCTGAAAGCAAAGACGGGGG....................................................................................................  >  NC_014034/408394‑408497 ................................................................................................GACGGGGGGCAGAGCCCCCCTCCCGGGTCTTTCTCAAGCGTTCCGGCTCAGAACCGGAAGCCCGCGCGCACCTGCACGGTGTTGAAGTTGGTGTCGACGCTGCGCGCA  >  NC_014034/2640261‑2640360 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG