New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 449696 =200 (0.920)2 (0.010) 2/192 35.5 0.01 coding (740/1509 nt) pykA1 pyruvate kinase
?NC_014034 = 1183242 198 (0.880)coding (265/2184 nt) RCAP_rcc01110 diguanylate cyclase/phosphodiesterase
Rejected: Position hash score below cutoff.

GAGGCTTTGTCGGAAAGCGTCGAGGAAACCGGCCGTCTGTTCGAGGGCGACCGCTTCGAGGTGGTCGAGACGCTGGCCCATGACGCCGATCTGCCGCAGGTGCG....................................................................................................  <  NC_014034/449799‑449696
....................................................................................................TGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCGGAGACAGCAGCGCCGCCAGATCAAGCCGGCCGATCACCTCGGCGGCGGGACGCCCGATCCAGTC  <  NC_014034/1183242‑1183143
                                                                                                                                                                                                            
                                                          AGGTGGTCGAGACGCTGGCCCATGACGCCGATCTGCCGCAGGTGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCGGAGACAGCAGCGCCGCCAG                                               >  2:4289345/1‑101 (MQ=255)
                                                           GGTGGTCGAGACGCTGGCCCATGACGCCGATCTGCCGCAGGTGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCGGAGACAGCAGCGCCGCCAGA                                              <  1:4289614/101‑1 (MQ=255)
                                                                                                                                                                                                            
GAGGCTTTGTCGGAAAGCGTCGAGGAAACCGGCCGTCTGTTCGAGGGCGACCGCTTCGAGGTGGTCGAGACGCTGGCCCATGACGCCGATCTGCCGCAGGTGCG....................................................................................................  <  NC_014034/449799‑449696
....................................................................................................TGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCGGAGACAGCAGCGCCGCCAGATCAAGCCGGCCGATCACCTCGGCGGCGGGACGCCCGATCCAGTC  <  NC_014034/1183242‑1183143

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG