New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 483444 =216 (1.010)3 (0.010) 2/190 35.3 0.01 coding (304/1026 nt) RCAP_rcc00449 hypothetical protein
?NC_014034 972433 = 219 (0.970)coding (1318/1788 nt) RCAP_rcc00882 divalent ion symporter
Rejected: Position hash score below cutoff.

ACGGCGCCTCCGAGGAACCGGGCGAAGAGCTTGAAATCGGCGACGAGCTGATGGTCGAGGCGATCGAAAAGGTGCAGGCGGTGATCGAAGCCCGGCGCCCGCATC....................................................................................................  <  NC_014034/483548‑483444
....................................................................................................GCATCGATGCCGACGAGGCCTTTTCCTATGTCGATGGCCGGCTTCTGGCGATGATCTTCGCCATGCTGGTGGTGGGCGAGGGGCTGGACGCCTCGGGGGCGGTTG  >  NC_014034/972433‑972532
                                                                                                                                                                                                             
            AGGAACCGGGCGAAGAGCTTGAAATCGGCGACGAGCTGATGGTCGAGGCGATCGAAAAGGTGCAGGCGGTGATCGAAGCCCGGCGCCCGCATCGAcgacaa                                                                                              <  2:1619407/101‑7 (MQ=255)
                             CTTGAAATCGGCGACGAGCTGATGGTCGAGGCGATCGAAAAGGTGCAGGCGGTGATCGAAGCCCGGCGCCCGCATCGATGCCGACGAGGCCTTTTCNNATG                                                                             >  1:2802948/1‑101 (MQ=255)
                                                                  AAAAGGTGCAGGCGGTGATCGAAGCCCGGCGCCCGCATCGATGCCGACGAGGCCTTTTCCTATGTCGATGGCCGGCTTCTGGCGATGATCTTCGCCATGCT                                        <  2:2802742/101‑1 (MQ=255)
                                                                                                                                                                                                             
ACGGCGCCTCCGAGGAACCGGGCGAAGAGCTTGAAATCGGCGACGAGCTGATGGTCGAGGCGATCGAAAAGGTGCAGGCGGTGATCGAAGCCCGGCGCCCGCATC....................................................................................................  <  NC_014034/483548‑483444
....................................................................................................GCATCGATGCCGACGAGGCCTTTTCCTATGTCGATGGCCGGCTTCTGGCGATGATCTTCGCCATGCTGGTGGTGGGCGAGGGGCTGGACGCCTCGGGGGCGGTTG  >  NC_014034/972433‑972532

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG