New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	504736 =	184 (0.850)	41 (0.190)	6/192	31.2	0.27	intergenic (+9/+101)	trpS/RCAP_rcc00470	tryptophanyl‑tRNA synthetase/MATE efflux family protein
	?	NC_014034	= 2330171	39 (0.170)					intergenic (+146/+166)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGAGCTGCGCTCATTCACCCCCCGGGATATTTGCGGCAAGATAAAGGGGCTCGGCTTTCATCTTGCCACAAATATCCCGGGGGTGCGGGGGCAGAGCCCCCGCC....................................................................................................  <  NC_014034/504839‑504736 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAAA  <  NC_014034/2330171‑2330072                                                                                                                                                                                                                                                                                cgCAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTG                                       >  1:4183025/3‑101 (MQ=1)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                    >  2:455498/1‑101 (MQ=32)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                    >  1:1428380/1‑101 (MQ=32)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                    >  2:2730419/1‑101 (MQ=32)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                    >  1:210484/1‑101 (MQ=32)                                                                          acgCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCG                                >  2:3595419/4‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                            >  2:2590454/1‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                            >  2:1389899/1‑101 (MQ=32)                                                                               GGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTagt                           >  1:1568482/1‑98 (MQ=17)                                                                               GGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                           >  1:2103477/1‑101 (MQ=32)                                                                               GGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                           >  1:4026583/1‑101 (MQ=32)                                                                                GGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                          >  2:1772347/1‑101 (MQ=32)                                                                                 GGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGC                         >  1:358669/1‑101 (MQ=32)                                                                                  GGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCC                        >  2:4376869/1‑101 (MQ=32)                                                                                    TGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCT                      >  2:1272127/1‑101 (MQ=32)                                                                                       ggggccggccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                   <  2:2103340/91‑1 (MQ=17)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                   >  2:1143206/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                   >  2:1339429/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                   >  2:352069/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCAGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                   >  2:2661408/1‑101 (MQ=14)                                                                                        GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGC                  >  1:1887689/1‑101 (MQ=32)                                                                                        GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGC                  >  2:3294478/1‑101 (MQ=32)                                                                                        GGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGACCTTGGC                  >  2:3296802/1‑101 (MQ=17)                                                                                         GGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCTGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCCCCCTTGGCG                 >  2:1049312/1‑101 (MQ=12)                                                                                         GGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCG                 >  2:4090765/1‑101 (MQ=32)                                                                                           gcgGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGA               >  2:3792962/4‑101 (MQ=11)                                                                                           gcgGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGA               >  2:4403295/4‑101 (MQ=11)                                                                                            gggccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG              <  1:1961494/96‑1 (MQ=1)                                                                                             gGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG             >  1:73698/2‑101 (MQ=1)                                                                                             gGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG             >  2:3974262/2‑101 (MQ=1)                                                                                             gGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGGTGCCGCCCTTGGCGGAGG             >  2:4346917/2‑101 (MQ=1)                                                                                               ccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC           <  2:1786215/99‑1 (MQ=1)                                                                                                cCCCCCGGCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA          <  2:3824296/100‑1 (MQ=1)                                                                                                 CCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA         >  2:3436649/1‑101 (MQ=1)                                                                                                  CCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG        >  1:2030083/1‑101 (MQ=1)                                                                                                  CCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG        <  1:3903213/101‑1 (MQ=1)                                                                                                  CCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG        >  2:4400030/1‑101 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC       >  2:3271453/1‑101 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC       >  1:601698/1‑101 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC       <  1:4394266/101‑1 (MQ=1)                                                                                                    CCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCC      >  1:1082643/1‑101 (MQ=1)                                                                                                                                                                                                              TGAGCTGCGCTCATTCACCCCCCGGGATATTTGCGGCAAGATAAAGGGGCTCGGCTTTCATCTTGCCACAAATATCCCGGGGGTGCGGGGGCAGAGCCCCCGCC....................................................................................................  <  NC_014034/504839‑504736 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAAA  <  NC_014034/2330171‑2330072 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG