New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	510059 =	53 (0.230)	19 (0.080)	2/198	36.0	0.26	intergenic (+46/+141)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	1253894 =	53 (0.230)					intergenic (+52/+39)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

GGGGGTCCGGGGGCGGAGCCCCC..................................................................................................  <  NC_014034/510081‑510059 .......................GCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  >  NC_014034/1253894‑1253991                                                                                                                           GGGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCC                    >  2:2399808/1‑101 (MQ=32) GGGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCC                    >  2:1491006/1‑101 (MQ=32)  GGGGTGCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCC                   >  1:1151499/1‑101 (MQ=32)      tgCGGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTG               >  1:1383334/3‑101 (MQ=31)         GGGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGC            >  2:27410/1‑101 (MQ=1)          GGGGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCT           >  1:1987220/1‑101 (MQ=1)            GGCGGAGCCCC..CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGC         >  2:3223851/1‑101 (MQ=1)                cggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGA       >  2:2647070/6‑101 (MQ=1)                cccCCCCCGGGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGA       <  1:2399965/98‑1 (MQ=9)                 ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  2:764841/5‑101 (MQ=1)                 ggagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      >  2:1639168/5‑101 (MQ=1)                 gGCCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGAT      <  1:4331141/100‑1 (MQ=1)                  gagCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATT     >  1:3383119/4‑101 (MQ=1)                   gCCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    <  2:1451238/100‑1 (MQ=1)                   agCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    >  2:1863516/3‑101 (MQ=1)                   agCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTT    >  2:2231343/3‑101 (MQ=1)                    gCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTC   >  2:3051593/2‑101 (MQ=1)                     CCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCc  >  1:3323764/1‑100 (MQ=1)                     CCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  <  1:1656276/101‑1 (MQ=1)                                                                                                                           GGGGGTCCGGGGGCGGAGCCCCC..................................................................................................  <  NC_014034/510081‑510059 .......................GCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAATTCGAGATGATCCGCAGCCCGGTGCGCTGCGATTTCT  >  NC_014034/1253894‑1253991 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG