New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 51008177 (0.350)16 (0.070) 12/192 26.5 0.29 intergenic (+68/+119) RCAP_rcc00475/RCAP_rcc00476 acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
?NC_014034 = 974303 1 (0.000)intergenic (+183/+76) RCAP_rcc00884/RCAP_rcc00885 hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CGACCCGCCGGGGGCTCCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/510050‑510081
............................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205
                                                                                                                                    
cgcCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTT                                 <  1:2807701/98‑1 (MQ=0)
  cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                               <  2:401383/100‑1 (MQ=0)
  cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGACGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                               <  1:3600549/100‑1 (MQ=0)
    CCGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTat                             <  1:1719805/101‑3 (MQ=0)
     CGCCGGGGGCTCCGCCCCCGGACCCCCGGGATTTTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                            <  1:1787265/101‑1 (MQ=0)
       CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGG                          <  2:3871155/101‑1 (MQ=0)
          GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                       <  2:698806/101‑1 (MQ=0)
           GGGCTCCGCCCCCGGACCCCCGGAATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                      <  2:3255890/101‑1 (MQ=0)
            GGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAA                     <  1:4143133/101‑1 (MQ=0)
                CCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATAC                 <  1:2280287/101‑1 (MQ=0)
                 CGCCCCCGGACCCCCGGTATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                <  2:3470574/101‑1 (MQ=0)
                 CGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                <  1:1697544/101‑1 (MQ=0)
                    CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG             <  1:1934919/101‑1 (MQ=0)
                         gcCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        <  2:2655610/99‑1 (MQ=0)
                         GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        >  1:2350016/1‑101 (MQ=0)
                         GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG        >  1:2907924/1‑101 (MQ=0)
                                                                                                                                    
CGACCCGCCGGGGGCTCCGCCCCCGGACCCCC....................................................................................................  >  NC_014034/510050‑510081
............................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGG  <  NC_014034/974303‑974205

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG