New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 523906249 (1.210)2 (0.010) 2/182 34.5 0.01 coding (1011/1149 nt) RCAP_rcc00492 hypothetical protein
?NC_014034 = 944961 202 (0.890)coding (798/810 nt) RCAP_rcc00853 hypothetical protein
Rejected: Position hash score below cutoff.

CATGGGGGCCTCGGCCGGATAGGGCGCCAGCGCCAGTTCCGGTTTCGGGCCGCGGCGCTTCAGCCCGGTGCCGACGCGGATCCACCATTCCAGCTTGCGCCGTCGCACC....................................................................................................  >  NC_014034/523798‑523906
....................................................................................................CGTCGCACCCCGTTCAGATTGACGGATCGCGATTTTTCCGCTAACGCGACCTCACCCGCAATCCGGCGGGCAGACGGGACGCCCGGTTTCAACGCGTCCCCCCACCCCG  <  NC_014034/944961‑944862
                                                                                                                                                                                                                 
                                         GTTTCGGGCCGCGGCGCTTCAGCCCGGTGCCGACGCGGATCCACCATTCCAGCTTGCGCCGTCGCACCCCGTTCAGATTGACGGATCGCGATTTTTCCGCT                                                                     >  2:2669376/1‑101 (MQ=255)
                                                 CCGCGGCGCTTCAGCCCGGTGCCGACGCGGATCCACCATTCCAGCTTGCGCCGTCGCACCCCGTTCAGATTGACGGATCGCGATTTTTCCGCTAACGCGAC                                                             <  1:2669548/101‑1 (MQ=255)
                                                                                                                                                                                                                 
CATGGGGGCCTCGGCCGGATAGGGCGCCAGCGCCAGTTCCGGTTTCGGGCCGCGGCGCTTCAGCCCGGTGCCGACGCGGATCCACCATTCCAGCTTGCGCCGTCGCACC....................................................................................................  >  NC_014034/523798‑523906
....................................................................................................CGTCGCACCCCGTTCAGATTGACGGATCGCGATTTTTCCGCTAACGCGACCTCACCCGCAATCCGGCGGGCAGACGGGACGCCCGGTTTCAACGCGTCCCCCCACCCCG  <  NC_014034/944961‑944862

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG