New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 531049	215 (1.030)	42 (0.200)	10/184	27.1	0.27	intergenic (+127/+14)	valS/RCAP_rcc00497	valyl‑tRNA synthetase/UbiA prenyltransferase
	?	NC_014034	1608059 =	15 (0.070)					intergenic (+329/‑18)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
Rejected: Position hash score below cutoff.

GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCCGC...................................................................................................  >  NC_014034/530952‑531049 ..........................................................................................ACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157                                                                                                                                                                                                                                                                    AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     >  1:1741914/1‑101 (MQ=32)                                                              AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     <  1:2587108/101‑1 (MQ=32)                                                              AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     >  1:3468806/1‑101 (MQ=32)                                                               ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  2:1502492/1‑101 (MQ=32)                                                               ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  1:3687742/1‑101 (MQ=32)                                                                TATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                   >  1:3295529/1‑101 (MQ=32)                                                                 ATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                  >  2:3630334/1‑101 (MQ=32)                                                                 ATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                  >  2:3955838/1‑101 (MQ=32)                                                                 ATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                  >  1:3574344/1‑101 (MQ=32)                                                                    CCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                               <  2:1535502/101‑1 (MQ=1)                                                                    CCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                               >  2:4439006/1‑101 (MQ=1)                                                                    CCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                               >  1:2650944/1‑101 (MQ=1)                                                                      acGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                             <  2:3118282/99‑1 (MQ=1)                                                                       cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                            >  2:3170388/2‑101 (MQ=1)                                                                        GGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:1908984/1‑101 (MQ=1)                                                                        GGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:329141/1‑101 (MQ=1)                                                                          gggtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCT                         >  1:2050041/7‑101 (MQ=1)                                                                           ggtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTTCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        <  2:1703473/96‑1 (MQ=1)                                                                           ggtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  1:515676/6‑101 (MQ=1)                                                                             tgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGG                      <  1:1709026/98‑1 (MQ=1)                                                                              gcGGGGGTGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGG                     <  2:3919940/99‑1 (MQ=1)                                                                              gcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGCTGCTGGGGCTCGGGCGCTCGGG                     >  2:755784/3‑101 (MQ=1)                                                                              gcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTACGCGCGTCGCGGTGCTGGGGATCGGGCGCTCGGG                     >  1:3828054/3‑101 (MQ=0)                                                                               cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGg                    >  1:4362308/2‑100 (MQ=1)                                                                               cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    >  2:2848497/2‑101 (MQ=1)                                                                               cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    <  2:869692/100‑1 (MQ=1)                                                                               cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    >  1:2337936/2‑101 (MQ=1)                                                                               GGGGGGTGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    <  1:397238/101‑1 (MQ=11)                                                                                GGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGgc                   >  2:1623668/1‑99 (MQ=1)                                                                                  GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  2:2855529/101‑1 (MQ=1)                                                                                  GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 >  2:3049709/1‑101 (MQ=1)                                                                                  GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  2:3197532/101‑1 (MQ=1)                                                                                  GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCCGGCGCTCGGGgccg                 >  2:1716454/1‑97 (MQ=0)                                                                                  GGGTGAGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  1:3818337/101‑1 (MQ=0)                                                                                     gGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              <  1:3956094/100‑1 (MQ=1)                                                                                     TGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              >  1:980875/1‑101 (MQ=1)                                                                                     TGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              >  1:3113801/1‑101 (MQ=1)                                                                                     TGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              >  1:2152608/1‑101 (MQ=1)                                                                                       TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCTGGCGCTCGGGTCTGGCCAC            >  1:2527691/1‑101 (MQ=1)                                                                                        GAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           <  1:2921619/101‑1 (MQ=1)                                                                                         AAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGG          >  2:2170299/1‑101 (MQ=1)                                                                                          AACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGC         <  1:4366978/101‑1 (MQ=1)                                                                                                                                                                                                       GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCCGC...................................................................................................  >  NC_014034/530952‑531049 ..........................................................................................ACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG