New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 540890239 (1.060)2 (0.010) 2/200 36.2 0.01 coding (272/969 nt) RCAP_rcc00506 type II secretion system protein
?NC_014034 = 2056359 211 (0.930)coding (876/6198 nt) RCAP_rcc01900 hemolysin‑type calcium‑binding repeat family protein
Rejected: Position hash score below cutoff.

GGCGCAAAAGGCCAATATCGCCTTTTCCCC.........................................................................  >  NC_014034/540861‑540890
..............................CGATGGCGTGATCGGCTCGGAGTTCAACGACAGCCTTGTCGGCTTCGACCATCAGGGCACCTCGGCCTCGGAC  <  NC_014034/2056359‑2056287
                                                                                                       
tGCGCAAAAGGCCAATATCGCCTTTT.CCCCGATGGCGTGATCGGCTCGGAGTTCAACGACAGCCTTGTCGGCTTCGACCATCAGGGCACCTCGGCCTCGGA   <  2:3193857/100‑1 (MQ=255)
 GCGCAAAAGGCCAATATCGCCTTTT.CCCCGATGGCGTGATCGGCTCGGAGTTCAACGACAGCCTTGTCGGCTTCGACCATCAGGGCACCCCGGCCTCGGAa  >  1:3194086/1‑100 (MQ=255)
                                                                                                       
GGCGCAAAAGGCCAATATCGCCTTTTCCCC.........................................................................  >  NC_014034/540861‑540890
..............................CGATGGCGTGATCGGCTCGGAGTTCAACGACAGCCTTGTCGGCTTCGACCATCAGGGCACCTCGGCCTCGGAC  <  NC_014034/2056359‑2056287

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG