New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 541745	170 (0.860)	2 (0.010)	2/174	33.7	0.01	coding (148/1014 nt)	RCAP_rcc00507	type II secretion system protein
	?	NC_014034	= 3419861	205 (0.910)					coding (362/1005 nt)	RCAP_rcc03220	hypothetical protein
Rejected: Position hash score below cutoff.

CTGGCTGGGTCCGATGGGCCCGGTCATCGCGCTGGCCGCGCTTGGCGCCGTTCTGGTGCTGGCGGCGCTGCCCGCGCTGGTGTCGAGACGCGAAGACCCGCTCGACAAGCTGC....................................................................................................  >  NC_014034/541633‑541745 ....................................................................................................CTCGACAAGCTGCATCAGGAGGTGATCGAGGCGGGCCATCGCGACGATCTGCGCGCCGCGCGCAAGGCGGTGGACCGGATGGCGAAGCTCTATTCCGCCCGGCCCGAGATGAA  <  NC_014034/3419861‑3419762                                                                                                                                                                                                                                                                        GTTCTGGTGCTGGCGGCGCTGCCCGCGCTGGTGTCGAGACGCGAAGACCCGCTCGACAAGCTGCATCAGGAGGTGATCGAGGCGGGCCATCGCGACGATCT                                                                 >  1:3668378/1‑101 (MQ=255)                                                                      GCCCGCGCTGGTGTCGAGACGCGAAGACCCGCTCGACAAGCTGCATCAGGAGGTGATCGAGGCGGGCCATCGCGACGATCTGCGCGCCGCGCGCAAGGCGG                                             <  2:3668125/101‑1 (MQ=255)                                                                                                                                                                                                                       CTGGCTGGGTCCGATGGGCCCGGTCATCGCGCTGGCCGCGCTTGGCGCCGTTCTGGTGCTGGCGGCGCTGCCCGCGCTGGTGTCGAGACGCGAAGACCCGCTCGACAAGCTGC....................................................................................................  >  NC_014034/541633‑541745 ....................................................................................................CTCGACAAGCTGCATCAGGAGGTGATCGAGGCGGGCCATCGCGACGATCTGCGCGCCGCGCGCAAGGCGGTGGACCGGATGGCGAAGCTCTATTCCGCCCGGCCCGAGATGAA  <  NC_014034/3419861‑3419762 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG  < 38 ≤  ATCG