| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 565304 = | 176 (0.840) | 76 (0.360) | 31/186 | 16.0 | 0.37 | intergenic (+119/+43) | RCAP_rcc00526/RCAP_rcc00527 | dimethylglycine dehydrogenase/family 25 glycosyl hydrolase |
| ? | NC_014034 | = 1303912 | 86 (0.380) | intergenic (+99/+58) | urtE/RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
AACGCCTTTGCAGGCTCGCGCGCGGCCTGGGGCGCCTGGCTCTCTGCCCGCGCCCAGCGCTGAACGGAGAAAGGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAA........................................................................................... < NC_014034/565409‑565304
...................................................................................................CGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGGAGGCAGCGC < NC_014034/1303912‑1303822
cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA < 2:2885445/93‑1 (MQ=255)
cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA > 2:1970132/9‑101 (MQ=255)
cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA > 2:3221761/9‑101 (MQ=255)
cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA < 1:3138648/93‑1 (MQ=255)
cccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCA < 2:3787186/93‑1 (MQ=255)
ccgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAA > 2:4304026/8‑101 (MQ=255)
cgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAA > 1:954819/7‑101 (MQ=255)
cgccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAA < 1:3534568/95‑1 (MQ=255)
gccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAAT > 2:381633/6‑101 (MQ=255)
gccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAAT < 1:4011676/96‑1 (MQ=255)
gccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAAT < 2:1056458/96‑1 (MQ=255)
ccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATA < 2:3027751/97‑1 (MQ=255)
ccccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATA < 2:1672072/97‑1 (MQ=255)
cccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATAT < 1:1435728/98‑1 (MQ=255)
cccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATAT < 2:3019233/98‑1 (MQ=255)
ccGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATC > 2:3812970/3‑101 (MQ=255)
cGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCC > 1:2516379/2‑101 (MQ=255)
GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC < 2:1214460/101‑1 (MQ=255)
GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC < 2:2584643/101‑1 (MQ=255)
GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC > 1:983552/1‑101 (MQ=255)
GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC > 2:2237596/1‑101 (MQ=255)
GAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGGGAAAGGATGGGGTTTATCTTGCCCCAAATATCCC > 1:3221725/1‑101 (MQ=255)
AAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCG > 1:3317379/1‑101 (MQ=38)
AAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCG > 1:284981/1‑101 (MQ=38)
AAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCG < 2:4434161/101‑1 (MQ=38)
AAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCG > 1:501348/1‑101 (MQ=38)
aaaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGG < 2:3727896/98‑1 (MQ=37)
aaaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGG > 2:1754790/4‑101 (MQ=37)
aaaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGG > 2:2633283/4‑101 (MQ=37)
aaaGGGAGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGG < 1:151104/98‑1 (MQ=255)
aaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGG > 2:3995351/3‑101 (MQ=37)
aaGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGG < 1:3925122/99‑1 (MQ=37)
GGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGG < 2:2442551/101‑1 (MQ=37)
GGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGG > 1:2364239/1‑101 (MQ=37)
GGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGT < 2:4170680/101‑1 (MQ=35)
GGGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTG > 1:1483656/1‑101 (MQ=35)
GGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGA < 2:2365971/101‑1 (MQ=35)
GGCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGA < 1:2684185/101‑1 (MQ=35)
GCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAG < 2:1301882/101‑1 (MQ=35)
GCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAG < 1:371556/101‑1 (MQ=35)
GCGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGACATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAG > 2:170973/1‑101 (MQ=25)
CGCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGG < 2:3386072/101‑1 (MQ=35)
GCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGC > 2:2897688/1‑101 (MQ=35)
GCTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGCGAAAGGATGGGGGTTATCTTGCCCCAAATATCCCGGGGGTGAGGC > 1:2673094/1‑101 (MQ=255)
CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG < 1:3662095/101‑1 (MQ=35)
CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG < 1:3630854/101‑1 (MQ=35)
CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCG > 1:157205/1‑101 (MQ=35)
CTGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCCGGGGTGAGGCG < 2:425627/101‑1 (MQ=25)
cGCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGA < 2:2149309/100‑1 (MQ=18)
GCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAA < 2:203506/101‑1 (MQ=33)
GCCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGGTTATCTTGCCCCAAATATCCCGGGGGGGAGGCGAA > 2:60573/1‑101 (MQ=16)
CCCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAG > 2:945895/1‑101 (MQ=32)
CCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGC < 2:2723696/101‑1 (MQ=32)
CCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGC < 2:1884445/101‑1 (MQ=32)
CCCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGACCCAAATATCCCGGGGGTGAGGCGAAGC > 2:295074/1‑101 (MQ=17)
CCCCTCTTGGCCTTTGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC < 2:686257/101‑1 (MQ=17)
CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC > 1:1217950/1‑101 (MQ=32)
CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC < 2:3353134/101‑1 (MQ=32)
CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC < 1:170994/101‑1 (MQ=32)
CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC > 2:1360714/1‑101 (MQ=32)
CCCCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCC < 1:4262033/101‑1 (MQ=32)
CCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGa < 1:3169815/101‑2 (MQ=14)
CCTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGa > 2:1711385/1‑100 (MQ=14)
CTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGag > 2:325956/1‑99 (MQ=11)
CTCTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGag < 2:4076247/101‑3 (MQ=11)
CTTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGaggg < 2:284946/101‑5 (MQ=1)
TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggg > 2:2944019/1‑96 (MQ=1)
TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGCTTATCTTGCCCCAAATATCCCGGGTGTGAGGCGAAGCCGagggg > 1:2522809/1‑96 (MQ=0)
TGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGaggggg < 2:422090/101‑7 (MQ=0)
TGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGaggggg < 1:2450951/101‑7 (MQ=0)
TGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGaggggg < 1:2321725/101‑7 (MQ=0)
TGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGCGAGGCGAAGCCGcggggg > 2:3646384/1‑95 (MQ=0)
GGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggc < 1:510354/101‑8 (MQ=0)
CCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcag < 2:3428870/101‑10 (MQ=0)
CTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcagc > 1:4186015/1‑91 (MQ=0)
CTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGagggggcagc > 2:2786927/1‑91 (MQ=0)
AACGCCTTTGCAGGCTCGCGCGCGGCCTGGGGCGCCTGGCTCTCTGCCCGCGCCCAGCGCTGAACGGAGAAAGGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCCAA........................................................................................... < NC_014034/565409‑565304
...................................................................................................CGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGGGGTTTATCTTGCCCCAAATATCCCGGGGGTGAGGCGAAGCCGGAGGCAGCGC < NC_014034/1303912‑1303822
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 28 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|