New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 646129186 (0.900)4 (0.020) 3/182 33.3 0.02 coding (67/1296 nt) mntH manganese transport protein MntH
?NC_014034 2101741 = 187 (0.830)coding (388/1365 nt) RCAP_rcc01941 FAD dependent oxidoreductase
Rejected: Position hash score below cutoff.

AGCCCGCCCCGGCCTGGATGTTCGTCGCGTAATTGCCCGGGTCCATATAGGCGACCGAGGCGATCACCGCCGGGCCGACAAAGGCAAGCATCGCCAGCGGGCCGCGCCG....................................................................................................  >  NC_014034/646021‑646129
....................................................................................................GCCGCGCCGCCAGCATCGCCGCCACCGCCCCCGCCAGCCGCGCCCGCGGCCAGCGGCGCAGATCGCGCAGCTCGATCGGGTAATGGCACAGCGTGCCTTCGGGATCGAT  >  NC_014034/2101741‑2101840
                                                                                                                                                                                                                 
                              AATTGCCCGGGTCCATATAGGCGACCGAGGCGATCACCGCCGGGCCGACAAAGGCAAGCATCGCCAGCGGGCCGCGCCGCCAGCATCGCCGCCACCGCCCC                                                                                >  1:4141689/1‑101 (MQ=255)
                                             TATAGGCGACCGAGGCGATCCCCGCCGGGCCGACAAAGGCAAGCATCGCCAGCGGGCCGCGCCGCCAGCATCGCCGCCACCGCCCCCGCCAGCCGCGCCCG                                                                 <  2:4141428/101‑1 (MQ=255)
                                                                                                   GGCCGCGCCGCCAGCATCGCCGCCACCGCCCCCGCCAGCCGCGCCCGCGGCCAGCGGCGCAGATCGCGCAGCTCGATCGGGTAATGGCACAGCGTGCCTTC           <  1:3365339/101‑1 (MQ=255)
                                                                                                   GGCCGCGCCGCCAGCATCGCCGCCACCGCCCCCGCCAGCCGCGCCCGCGGCCAGCGGCGCAGATCGCGCAGCTCGATCGGGTAATGGCACAGCGTGCCTTC           <  2:1022769/101‑1 (MQ=255)
                                                                                                                                                                                                                 
AGCCCGCCCCGGCCTGGATGTTCGTCGCGTAATTGCCCGGGTCCATATAGGCGACCGAGGCGATCACCGCCGGGCCGACAAAGGCAAGCATCGCCAGCGGGCCGCGCCG....................................................................................................  >  NC_014034/646021‑646129
....................................................................................................GCCGCGCCGCCAGCATCGCCGCCACCGCCCCCGCCAGCCGCGCCCGCGGCCAGCGGCGCAGATCGCGCAGCTCGATCGGGTAATGGCACAGCGTGCCTTCGGGATCGAT  >  NC_014034/2101741‑2101840

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG