New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	11 (0.060)	54 (0.300)	16/160	20.5	0.39	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 2232351	161 (0.710)					coding (2157/2772 nt)	RCAP_rcc02068	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

CGGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681240‑681121 ....................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGCG  <  NC_014034/2232351‑2232252                                                                                                                                                                                                                                                  TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                     <  1:2332736/101‑1 (MQ=1)                     TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                     <  2:3595655/101‑1 (MQ=1)                      GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                    <  1:4361313/101‑1 (MQ=1)                      GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                    >  1:4389270/1‑101 (MQ=1)                      GGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGG                                                                                                    >  2:2947196/1‑101 (MQ=1)                       GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                   >  1:1125774/1‑101 (MQ=1)                        CCGTGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                  <  1:3997554/101‑1 (MQ=1)                        CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                  >  1:668269/1‑101 (MQ=1)                         CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                 >  2:3664115/1‑101 (MQ=1)                         CGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGC                                                                                                 >  2:4431867/1‑101 (MQ=1)                          GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  2:2523015/101‑1 (MQ=1)                          GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                >  1:1485425/1‑101 (MQ=1)                          GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                                <  2:2456589/101‑1 (MQ=1)                           CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                               <  2:2535232/101‑1 (MQ=1)                            GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                              >  1:1659381/1‑101 (MQ=1)                            GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                              >  2:1827950/1‑101 (MQ=1)                             CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  1:2851909/101‑1 (MQ=1)                             CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  1:3257642/101‑1 (MQ=1)                             CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                             <  1:3591720/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  2:2363738/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:1349224/1‑101 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  2:2691636/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:3021743/1‑101 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  2:3252325/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  2:466137/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  2:987706/1‑101 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  1:1068242/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  1:2604043/101‑1 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            >  1:80315/1‑101 (MQ=1)                              TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                            <  1:3563682/101‑1 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  2:2916626/1‑101 (MQ=1)                               GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                           >  2:2815130/1‑101 (MQ=1)                                AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                          >  1:4306569/1‑101 (MQ=1)                                 GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACg                                                                                         <  1:906473/101‑2 (MQ=1)                                 GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACg                                                                                         <  2:2391040/101‑2 (MQ=1)                                  CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACgg                                                                                        <  1:2299009/101‑3 (MQ=1)                                   ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggc                                                                                       >  2:4178248/1‑98 (MQ=1)                                   ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggc                                                                                       <  2:3136335/101‑4 (MQ=1)                                    CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGTCAACGTGGCGCTGACGACggcg                                                                                      <  1:3499414/101‑5 (MQ=0)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     <  1:1656611/101‑6 (MQ=1)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     >  1:2216150/1‑96 (MQ=1)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     <  2:3080092/101‑6 (MQ=1)                                     GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgc                                                                                     >  1:2477200/1‑96 (MQ=1)                                      gCGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgca                                                                                    <  2:3884138/100‑7 (MQ=1)                                      ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgac                                                                                    <  2:905471/101‑7 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                   <  2:3459068/101‑8 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                   >  1:823420/1‑94 (MQ=1)                                       CGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCCCGGCACCGATGACATCGTGGCGCTGACGACggcgcag                                                                                   <  1:3731015/101‑8 (MQ=1)                                        GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                  <  1:2004199/101‑9 (MQ=1)                                        GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACggcgcagg                                                                                  >  1:1600619/1‑93 (MQ=1)                                          AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  2:1788875/1‑100 (MQ=1)                                          AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  2:4307830/1‑100 (MQ=1)                                          AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCg                                                                                >  2:952210/1‑100 (MQ=1)                                           GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCgg                                                                               >  2:6110/1‑99 (MQ=11)                                                                                                                                                                                                                              CGGGCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT....................................................................................................  <  NC_014034/681240‑681121 ....................................................................................................CTCGGCACCGATGACATCGTGGCGCTGACGACCGGTCAGGCCGCCGCGCTGAGCTCGACGCAGGTGGCGGCGCTCAGCACGGCGCAGATCTCCGCGCTGCAGACGGCGGATTTCGCCGCG  <  NC_014034/2232351‑2232252 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG